Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1100 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  388 bits (996), Expect = e-111
 Identities = 333/1115 (29%), Positives = 514/1115 (46%), Gaps = 164/1115 (14%)

Query: 24   QKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKYLGYLNKEV 83
            Q TV G VTD +G P+ G SV  KGTT GT T  +G +TL VPS++ I   Y+GY  + +
Sbjct: 112  QITVKGVVTDMRGEPIIGASVVEKGTTNGTITDLDGNFTLKVPSDAIINITYVGYQPQSL 171

Query: 84   SVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAAL 143
            SV    T  + + +++ AL +VVVT +G ++   +L Y+   + GD++  A   N IAAL
Sbjct: 172  SVSGQTTFKIKMEEESMALEQVVVTAMGIKKKAASLTYSTQQLGGDELTRAKDPNMIAAL 231

Query: 144  QGLVPGMMVQPGTGGPQSSPKFQIRG-ASSLYGSENTPLIVVDGVIL---SDDAMSPARA 199
             G   G+ +     G   S K  IRG  S+     N PL V+DGV +   + +++S    
Sbjct: 232  AGKSAGVQISKSASGLGGSAKVSIRGIRSANEDGNNQPLYVIDGVPMLNSTTESVSTVMG 291

Query: 200  G-----DQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGL- 253
            G     ++D G+ + ++N DDIES+S+LKG S  ALYGS+A NGV+LITTKKG A  G+ 
Sbjct: 292  GKNDGVNRDAGDGISNLNPDDIESMSILKGASAAALYGSQAANGVILITTKKGKA--GIQ 349

Query: 254  GISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTI 313
             I++S   T D+A +LP+ Q  YG                    A  G S+G K     +
Sbjct: 350  RITYSSGLTVDHAISLPEFQNSYG--------------------AKAGSSWGEK---ENV 386

Query: 314  LDIDGRQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLN 373
             D D          N  + +  G    +++S+  GNEK    FSYAN   KGI   NKL 
Sbjct: 387  KDYD----------NAGNWFNNGVTAINSVSVMTGNEKLQTYFSYANTTAKGIVDSNKLR 436

Query: 374  RHTFNFRGTQRL-GDAVVIDATASYSNVRGFNPQRISGDNSL-----IYGLTWG-----Y 422
            +H    R +  L  D + +DA A+   V+       SG   L     +YG   G     Y
Sbjct: 437  KHNLTLRESASLFNDRLKLDANANLM-VQTIKNSPTSGGIYLNPLVDVYGFPRGQDLSEY 495

Query: 423  PTNFDLDYWKDNYIDPVNGGRSTVDPFTTNQLFFRLNKFSQIQNENNFR--GTINAKTNF 480
             TNF  + + +N   PV    +T   +T N  + + N+   + N   +R   ++ A    
Sbjct: 496  ATNF--EKFDENRNMPVQSWFTTPSEWTQNPYWVK-NRI--LNNNKRYRALASLTANLKA 550

Query: 481  TKWLQLETSASLNWYNTNKEDRELGQDP-----GFKGGYYGSGIRNVIDSRYRAGLNLNH 535
            T WL L+   +++ Y ++K D+++         G  G Y  +  +N +       +  N 
Sbjct: 551  TDWLNLQARGNVD-YVSDKFDQKMYASTSPAIVGNNGRYVYADTQNFLIYGDVMAM-FNK 608

Query: 536  KVNDFDLFLQLGSEV-VRSQSKGANYGTSGGLKVPAQYRLSNSI-NTPTVGEGTPNISQV 593
               DF +   LG  + V++++       +  L  P  + + N + NT    E   +  + 
Sbjct: 609  HFGDFSVNAALGGSINVQTENSLTLDSKTASLYKPNLFTVPNIVMNTSASAEQVIDRRRT 668

Query: 594  FAS-YAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPS 652
              S +A   +G+K+ L L+L AR +W+STL ++N   +  +FYP   L+W+  ++ K+P 
Sbjct: 669  IQSVFATAQVGWKDALFLDLTARNDWSSTLSHTNSV-DKGFFYPSVGLSWVINESFKLPQ 727

Query: 653  VFSYGKLRASYVVTGGGTVVYRSNTGYYL-KGSNYQAVNSNTANIEQYGFDSQTLGNPDL 711
              S+GK+R S+   G    +  ++    +  G   QAV+                   DL
Sbjct: 728  WISFGKIRGSWAQVGNDLPIGITDLSDIIGAGGKLQAVD--------------VYNRGDL 773

Query: 712  KPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQ 771
            KP  + S E G+E ++F +R+  DFT Y+ +TKNQ++ +   +      R IN+G ++++
Sbjct: 774  KPEISNSIEFGLEWRLFNSRVDFDFTYYKTDTKNQLLKVPTSAGEDYAYRYINAGKIRNK 833

Query: 772  GIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAPGVTTVQLEGGDGIRTI----AKVG 827
            G E  L  TP+ T+ F W   FNY++NRNK++ LAP  T+  + G  G         K G
Sbjct: 834  GFEITLGATPVLTEDFRWKTTFNYSQNRNKVVELAPNYTSF-VYGDPGFSMAYMMQIKEG 892

Query: 828  GEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLESEST 887
            G    +     Y    ARD  G  I   + GK  IS +G                 +++ 
Sbjct: 893  GSLGDI-----YGNTFARDEQGK-IKVSDEGK-PISESG-----------------NKTY 928

Query: 888  IGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVEN 947
            +G+  P F  S  N FTYK  SL  LID + GG V S T          + TL GR V  
Sbjct: 929  LGNCNPDFLLSWANTFTYKGFSLYFLIDMRKGGDVMSLT----------QATLDGRGVTK 978

Query: 948  GGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNG 1007
                  + G  E+         DGT     NV G                    + +  G
Sbjct: 979  ATAEARDRGYVEV---------DGTRFE--NVEG--------------------FYSVVG 1007

Query: 1008 WGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIKM-NGVKVYASARNIGFLYNNAP-D 1065
              NGI ER  + ++ + +R+++LSY  P   ++K K+  G+ V    RN+ F Y +AP D
Sbjct: 1008 DRNGISERYMYSATNIRLRELSLSYSFPSTLLAKTKVFTGIDVSLVGRNLFFFYKDAPFD 1067

Query: 1066 NLNVNDFTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
               +    +T  G      G P  R  G  +  +F
Sbjct: 1068 PDAILSVGNTNQGVDVF--GMPTTRNIGFNVKFTF 1100