Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 959 a.a., outer membrane protein Omp121 (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  369 bits (947), Expect = e-106
 Identities = 292/1028 (28%), Positives = 470/1028 (45%), Gaps = 104/1028 (10%)

Query: 90   TINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQGLVPG 149
            T+ V L  D++ L EVVVT +G +R+ ++LGYA++++KGD+I  A   N + +L G + G
Sbjct: 11   TLKVLLKSDSQNLEEVVVTAMGIKRSEKSLGYAVSSVKGDEITKARESNVLNSLSGKIAG 70

Query: 150  MMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARA-GDQDFGNVL 208
            + +   +G    S   QIRGASS+ G+ ++PL ++DG+ + + + +P R  G  D GN  
Sbjct: 71   LQIAQSSGTVGGSSSIQIRGASSI-GTVSSPLFIIDGLPIDNGSYNPDRTNGIVDVGNRA 129

Query: 209  KSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGISFSHDETFDNAYA 268
              INSDDIESI+VLKG + TALYG+RA +G ++ITTKKG     + ++ +    F+N   
Sbjct: 130  GDINSDDIESINVLKGAAATALYGARAKDGAIVITTKKGKKNSPVFVTVNSSTRFENVLK 189

Query: 269  LPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDG---STILDIDGRQIS-NS 324
            LPD Q EY  G      +K  NG            +GPK+         D  G +++  +
Sbjct: 190  LPDFQNEYAQGSYGVYNVKMLNG------------WGPKISSVQDQQFTDYKGDKVTLKA 237

Query: 325  ILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQR 384
              +N    YETG    +N+S+ GG EK  FR S+ +    G+ P +  N++ F+      
Sbjct: 238  NPDNVKDFYETGMSYINNVSVAGGGEKADFRLSFTSTNQTGVVPGSDYNKYAFSVNAGMN 297

Query: 385  LGDAVVIDATASY--SNVRGFNPQRISGDNSLIYGLTWGYPTNFDLDYWKDNYIDPVNGG 442
                     +A Y  S+  G  P + + D++L+  L  G P   D+   K N+ID  NG 
Sbjct: 298  FTSNFTGRISAQYIRSDSEG-RPAQGANDSNLLIPLINGLPRTIDIHDIKQNWIDE-NGK 355

Query: 443  RSTVDPF-TTNQLFFRLNKFSQIQNENNFRGTINAKTNFTKWLQLETSASLNWYNTNKED 501
            + T+DP   +N  ++ +NK     N +   G I       + L +  +A  ++Y   +  
Sbjct: 356  QVTLDPEGKSNNPYWIINKNKFTNNLDRMIGNITLTYKPIEGLTITNNAGTDFYTEGRRK 415

Query: 502  RELGQDPGFKGGYYGSGIRNVIDSRYRAGLNLNHK---VNDFDLFLQLGSEVVRSQSKGA 558
                   G   G + +   N+        L ++++    ND+     +G  + + + K  
Sbjct: 416  LYAKGTVGALNGKFQTW--NLYKRIINNDLMVSYEKTFANDYHFKAMVGHNLYQEEWKNE 473

Query: 559  NYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVFASYAQGSIGYKNWLTLNLYARKEW 618
            N      L V   Y  +N+ +T  V        ++   Y   S+GYK+ L +N+  R +W
Sbjct: 474  NVQAQN-LVVDGLYTYTNAKSTTPVNYYEKK--RLVGLYGDISLGYKDMLFINVTGRNDW 530

Query: 619  NSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLRASYVVTGGGTVVYRSNTG 678
            +STL  +N +    YFYP    ++IFT+ ++   + +YGK+R SY   G     Y     
Sbjct: 531  SSTLPINNRS----YFYPSISGSFIFTELMENKDILNYGKIRLSYANVGSDEDPYNLAFK 586

Query: 679  YYLKGSNYQAVNSNTANIEQYGFDSQT----LGNPDLKPLRAFSKEIGIELKMFKNRLGL 734
            Y    + +     N       G    T    L N +LKP    S E+G +L+ F  ++ L
Sbjct: 587  YTPASTYFLQYLGNVNTFPHMGLVGFTGPRVLPNENLKPQNQSSFEVGADLRFFGGKIRL 646

Query: 735  DFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSFSWDAFFN 794
            D T Y   TKNQI+++ VP  +G     IN+G + ++G+E  L  TP++T++F WD    
Sbjct: 647  DMTYYSNITKNQIVSIDVPLSTGYFANNINAGKIANKGVEVTLGLTPVETRNFKWDLDAT 706

Query: 795  YTRNRNKIISLAPGVTTVQLEGG-DGIRTIAKVGGEYSTLVAAYGYAKYQARDANGNPID 853
            +  N+  +  LA G+    L  G  G++  A  G  +        Y     RD  GN + 
Sbjct: 707  FASNKQTVEELAEGLDEYTLTSGLSGLQIKAAKGDSFGL------YGTAWKRDDQGNYVI 760

Query: 854  NPNNGKRVISPAGTGGAFYTRASNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSLSAL 913
            N   G R                   N +     +G   P F   I N  TYK L+ S L
Sbjct: 761  NSKTGLR----------------ETVNNVR----LGDVYPDFTMGINNTLTYKGLTFSFL 800

Query: 914  IDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFA--DG 971
            ID + GG ++S+T        NL++        +G  A T A  ++   +  GV    DG
Sbjct: 801  IDIRHGGSLYSET------VANLRS--------SGLAAETVAHREDASFIEPGVILQDDG 846

Query: 972  TI-INGVNVGGMSHQQAIDKGLRIPTITWRYY-NNSNGWGNGIRERGAFKSSWVAVRDIT 1029
            T   N V V  M                W++  N+SN  GN       + +S+V +R++ 
Sbjct: 847  TYRPNDVPVKSMQDY-------------WQHVANSSNNEGN------IYNASFVKLREVQ 887

Query: 1030 LSYDLPKAFVSKIKMNGVKVYASARNIGFLYNNAPD-NLNVNDFTSTGAGGAFLGGGTPY 1088
            LSY  P+ +     +  + +   ARN+  + ++ P  +   N F  +  GG       P 
Sbjct: 888  LSYSFPRKWFKSFFVKSLDLGFEARNLWIIKDHVPHIDPEANFFGPSQIGGGVEFNSIPS 947

Query: 1089 VRTFGLGI 1096
             R+FG  +
Sbjct: 948  TRSFGFNL 955