Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1101 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  348 bits (892), Expect = 2e-99
 Identities = 325/1177 (27%), Positives = 515/1177 (43%), Gaps = 153/1177 (12%)

Query: 1    MKKIYL-------TSLSILLLCMATISAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTK-G 52
            M+K+YL       T L +LL   A   +   + V+G V D  G PL G ++ + G     
Sbjct: 1    MEKLYLKRSWRIGTCLMVLLTFFALSLSAQNRKVTGVVVDEFGDPLPGANITVVGNQNLA 60

Query: 53   TSTSTEGKYTLS-VPSNSTIVFKYLGYLNKEVSVG---DNNTINVTLLDDAKALGEVVVT 108
            T+T+ EG++TL+ VP ++ +  +++GY  K + +    +N+ + + L +D K L +VVVT
Sbjct: 61   TATNMEGQFTLNNVPKDAILNVRFIGYAVKTIRLATLKNNDLLRIVLSEDVKELNDVVVT 120

Query: 109  GLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIR 168
             LG  R +++LGYA  +I  + +      N + +L G V G+      GGP SS + +IR
Sbjct: 121  ALGISRESKSLGYARQSIDTESLLDTRDPNLLNSLSGKVSGVNFI-SNGGPLSSTRVEIR 179

Query: 169  GASSLYGSENTPLIVVDGVILSDDAMSP-ARAGDQDFGNVLKSINSDDIESISVLKGGSV 227
            G +SL G+ N PL V+DGV +    M+P    GD D+GN   +I+ DDIESI VLKG + 
Sbjct: 180  GNNSLTGN-NQPLYVIDGVPI----MNPMGEDGDLDYGNPASAISPDDIESIEVLKGANA 234

Query: 228  TALYGSRAINGVLLITTKKGFAQKGLGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIK 287
             ALYGS A NGV+LITT+K   + GLG+S+ ++  F      P  Q  YGS   P   + 
Sbjct: 235  AALYGSDAANGVILITTRKATKKSGLGVSYGYNMQFTFLREFPAYQNVYGSASLPA--VG 292

Query: 288  GANGMNQINSASY-GFSFGPKLDGSTIL------------------DIDGR--QISNSIL 326
              +G N   S S  G+++ P L     +                  D+ GR  QI + + 
Sbjct: 293  VGDGFNYYGSNSKNGYAYDPSLPYGIFVFNWANPNQRSWGLPMLGFDLVGRNNQIRSYVP 352

Query: 327  NNP--LSLYETGRYVNSNISMQGGNEKTTFRFSYAN-NFTKGISPYNKLNRHTFNFRGTQ 383
            N      +YE G  +  ++S+         RF+Y   ++   +  ++ + RHTF+ R   
Sbjct: 353  NKDGITDMYEMGVAMTHSVSVNKVFNGAGIRFNYTGIDYDGMLKNFDNMKRHTFDLR--- 409

Query: 384  RLGDAVVIDATASYSNVRGFNPQRISGDNSLIYGLTWGYPTNFDLDYWKDNYIDPV-NGG 442
                 V +D     S+    N Q  + DN    G +   P    ++  +D  ++ +    
Sbjct: 410  -----VNMDLAKWLSSEISVNYQLETADNRDYKGDSNRNPMRAIMNMPRDVVMEELLPWK 464

Query: 443  RSTVDPFTTNQLFFR----LNKFSQIQNENNFRGTINAKTNFTKWLQLETSASLNWYNTN 498
            R T + FT    F+     LN+ S     NNFRG +       + + +   AS+   N N
Sbjct: 465  RETGEAFTRGNGFYNPYWLLNEISNGDGRNNFRGNLTLNIKPIQGMNIRLRASVEKANKN 524

Query: 499  KEDRELGQDPGFKGGYYGSGIRNVIDSRYRAGLNLNHKVNDFDLFLQLGSEVVRSQSKGA 558
                +         G Y +      +  Y   ++ N  +    L   LG+ + ++     
Sbjct: 525  GWKFDNYYTMWDIDGQYETFREASNNYNYEGVISYNRNIKKVSLSANLGTSMQKNDWYKL 584

Query: 559  NYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVFASYAQGSIGYKNWLTLNLYARKEW 618
             +     L  P    LSN+ +  + G  + N  +  + +   S+GY        + R +W
Sbjct: 585  -WNQVSQLAAPDVKSLSNNASILS-GTESVNAKEKQSVFGMLSLGYHGLFVDGTF-RNDW 641

Query: 619  NSTLVYSNGTGNYNYFYPGADLAWIFTDAL-KMPS-VFSYGKLRASYVVTGGGTVVYRSN 676
            +S+L  +N +    YFY     + + T+   K+ S  FS+ KLR S    G      R  
Sbjct: 642  SSSLPKANNS----YFYASGSASAVLTEIFPKLKSKTFSFAKLRGSIARVGNDAGFDRLI 697

Query: 677  TGYYLKGSNYQAVNSNTANIEQYGFDSQTLG-NPDLKPLRAFSKEIGIELKMFKNRLGLD 735
              Y     +Y  +  N    +   F    +  NP+LKP    SKEIG E+++   RL  D
Sbjct: 698  NSY-----SYGGLFRN----DMAWFQGDAVRKNPNLKPETTISKEIGAEVRLLDGRLTAD 748

Query: 736  FTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSFSWDAFFNY 795
             T Y K T++QI+   +   S  Q  +INSG + ++G E  +SG P+K ++F W   FN+
Sbjct: 749  VTYYDKYTRDQIVESELSYLSNYQRVIINSGKISNKGWEISVSGVPVKVKNFEWKTIFNW 808

Query: 796  TRNRNKIISLAPGVTTVQLEGG-DGIRTIAKVGGEYSTLVAAYGYAKYQARDANGNPI-- 852
            ++N + + SL  G+  +Q+  G   +++ A+VG  Y  +     YAK   RDA G  +  
Sbjct: 809  SKNNSMVESLPEGIDKIQIGSGVYNVKSYAEVGKPYGAI-----YAKTFKRDAEGYILCQ 863

Query: 853  --DNPNNGKRVISPAGTGGAFYTRASNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSL 910
               +P  G                        +    +G     + G   NVF   + S 
Sbjct: 864  LDGSPKEG------------------------QDYEYLGCVQADWRGGWNNVFRLGNFSF 899

Query: 911  SALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGR--------------------------- 943
            S + D + GG  FS T    S  G    +L GR                           
Sbjct: 900  SVMFDFQKGGKFFSQTSIQSSVDGQSVKSLEGRDADFFSRKILGESDEERYGFMRPQNAN 959

Query: 944  TVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYN 1003
            T    G  Y + G  + GVVL     D       +V G++ QQ +  G   P   W +Y 
Sbjct: 960  TPTANGQIYPDWGRPK-GVVLPNCRYD------EDVEGLAGQQVL--GYCTPERYWMHYT 1010

Query: 1004 NSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIKMNGVKVYASARNIGFLYNNA 1063
            + +        R  + +S+V +R+IT+SYDLPK ++ K      +V A  RNI  L+ N 
Sbjct: 1011 SRD------ISRFIYDASYVKLREITVSYDLPKKWLRKTPFQTFRVAAVGRNIATLFANT 1064

Query: 1064 PDNLNVNDFTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
            P  L+    ++TG    F  G      T+G  I  SF
Sbjct: 1065 PHGLDPQATSTTGNAQGFERGFNLPSATYGFDIKVSF 1101