Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1110 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  283 bits (725), Expect = 4e-80
 Identities = 281/1091 (25%), Positives = 460/1091 (42%), Gaps = 187/1091 (17%)

Query: 25   KTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKYLGYLNKEVS 84
            K VSG V D    PL GV++ ++G+++G  T  +G + +  P  ST+ F Y+GY  + V 
Sbjct: 121  KKVSGIVIDENNEPLIGVNIKVEGSSEGAITDIDGNFNIMAPQGSTLSFTYVGYTPQTVK 180

Query: 85   VGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQ 144
            + D N   + L  D K L EVVVT LG +R  + L Y +  +K DQ+      N + +L 
Sbjct: 181  ITDKNIYEIRLASDTKQLNEVVVTALGIKREQKALSYNVQQVKSDQLTTIKDANFVNSLS 240

Query: 145  GLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARAGDQDF 204
            G V G+++   + G   + K  +RG  S+  S N  L V+DG+ +     +    G  +F
Sbjct: 241  GKVAGVIINSSSSGVGGASKVVMRGTKSIEKSNNA-LYVIDGIPM----YNFGGGGSTEF 295

Query: 205  GN-----VLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGISFSH 259
            G+      +  +N DDIES+SVL G +  ALYGS A NG +++TTKKG   K L  S S 
Sbjct: 296  GSKGETESIADLNPDDIESLSVLTGAAAAALYGSNAANGAIIVTTKKGKIGK-LQASVST 354

Query: 260  DETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTILDIDGR 319
               +   + +P  Q  YG+         G+NG               K DGST+    G 
Sbjct: 355  GIDWLKPFVMPKFQNRYGT---------GSNG---------------KSDGSTVWSW-GP 389

Query: 320  QISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNF 379
            ++ NS   +P    +TG   N+++++  G EK    FS A   + G+ P N+ NR+ F F
Sbjct: 390  KMGNSPGYDPNDFLKTGAVYNNSVTLSTGTEKNQTFFSAAALNSDGMIPNNRYNRYNFTF 449

Query: 380  RGTQR-LGDAVVIDATASY--SNVRGFNPQRISGDNSLIYGLTWGYPTNFDLDYWKDNYI 436
            R T   L D + +D  ASY   N R    Q     N L+    +    NF      + Y 
Sbjct: 450  RNTTSFLNDKMKLDVGASYILQNDRNMTNQG-QYSNPLVPAYLYPRGDNFSTVKVFERY- 507

Query: 437  DPVNGGRSTVDPF-TTNQLFFRLNK-----FSQIQNENNFRGTINAKTNF--TKWLQLET 488
               N  R   + F  + +   R+       +  ++  +  R  ++A   +    WL L  
Sbjct: 508  ---NEARKINEQFWPSGEGDLRMQNPYWIAYRNLRENSKKRYMLSAGLTYDVLDWLSLSG 564

Query: 489  SASLNWYNTNKEDRELGQ-----DPGFKGGYYGSGIRNVIDSRYRAG--LNLNHKVNDFD 541
               ++  N   E +           G + GYY  GI    +S+  A   +N+N +V DF 
Sbjct: 565  RIRIDNSNNTYEQKYYASTITTLTEGSEQGYY--GIEKSGNSQTYADFLVNINKRVGDFT 622

Query: 542  LFLQLGSEVVRSQSKGANYGTSGGLK---VPAQYRLSNSINTP--TVGEGTPNISQVFAS 596
            +   +G+ +  S +     G +G ++   +P  + + +  NT      EG   ++Q  + 
Sbjct: 623  IVANIGTSL--SDNSYDMLGYNGPIQEKGIPNVFNVFDLDNTKKRATQEGWEEMTQ--SI 678

Query: 597  YAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSY 656
            +A   +G+K+ L L L  R +W S L+   G+   ++FYP   L+ + ++ +K+P    Y
Sbjct: 679  FASAEVGWKSMLYLTLTGRNDWASQLL---GSSQTSFFYPSVGLSGVISEMVKLPEWIDY 735

Query: 657  GKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLG--------N 708
             K+R S+                    S+          I  Y +D+  LG         
Sbjct: 736  LKVRGSF--------------------SSVGMPYPRFLTIPTYKYDTTILGWLPKTHYPI 775

Query: 709  PDLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDV 768
              L P R  S E G++   FK+ L L  + Y  NT NQ  +  + +  G     + +G V
Sbjct: 776  GKLYPERTDSWEAGLDATFFKD-LRLSASFYYANTYNQTFDPKISASFGYSKFYVQTGYV 834

Query: 769  QDQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAP-----------GVTTVQLEGG 817
            ++ G+E +LS    +   F W++ F ++ N+NKII L              +  +++ G 
Sbjct: 835  RNMGMEGMLS-YGHRWNEFGWNSNFTFSWNKNKIIELVKDFHHPETGKILNIPELEMNGL 893

Query: 818  DGIRTIAKVGGEYSTLVAAYGYAK----YQARDANGNPIDNPNNGKRVISPAGTGGAFYT 873
               R I K GG    L +     +    Y   DANG    + N     + P         
Sbjct: 894  GYSRFILKEGGTLGDLYSKADLVRNDKGYIEMDANGALAKDAN-----VEPI-------- 940

Query: 874  RASNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQT 933
                          +GS LPK   +  N FTYK +S   L+  + GG V+S T     Q 
Sbjct: 941  -------------KLGSVLPKANFAFSNEFTYKGVSAGFLLSCRLGGIVYSATQAALDQY 987

Query: 934  GNLKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLR 993
            G          V        +AG    GVV++G     T+IN                  
Sbjct: 988  G----------VSEASAKARDAG----GVVING----RTMINA----------------- 1012

Query: 994  IPTITWRYYNNSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIKMNGVKVYASA 1053
                  + +  + G  +G+ +   + ++ + +++  + Y +P+ ++  I    + V    
Sbjct: 1013 ------QQWYETIGSSSGLPQYYTYSATNIRLQEAHIGYTIPRRWLKNI--CDINVSLVG 1064

Query: 1054 RNIGFLYNNAP 1064
            RN+  +Y  AP
Sbjct: 1065 RNLWMIYCKAP 1075