Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 940 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  303 bits (776), Expect = 4e-86
 Identities = 278/1041 (26%), Positives = 448/1041 (43%), Gaps = 177/1041 (17%)

Query: 78   YLNKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTI 137
            ++++ +++ +   + VT+ +D + L EVVVT LG +R  + L Y +  +KG+ + A    
Sbjct: 9    HISQSITLANAQPLKVTMGEDTQTLDEVVVTALGIKREQKALSYNVQQVKGEALTAVKDA 68

Query: 138  NPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPA 197
            N I +L G V G+ +  G  G   + +  +RG  SL  + N  L V+DGV + +   S  
Sbjct: 69   NFINSLAGKVAGVQISSGATGAGGATRVVMRGMKSLTKNNNA-LYVIDGVPMFNTGSS-- 125

Query: 198  RAGDQDFGNV-----LKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKG 252
              GD  +G++     +  +N DDIESIS++ G S  ALYGS A NGV+L+ TKKG  +K 
Sbjct: 126  -GGDGQYGSMGGSDAVADLNPDDIESISMMTGPSAAALYGSAAANGVVLVNTKKGKKEK- 183

Query: 253  LGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGST 312
            + ++ S+  TF  AY +P+MQ  YG+          ++G+         FS+G   D   
Sbjct: 184  ISLTVSNSTTFSKAYIMPEMQNRYGT----------SSGL---------FSWGDLTDKRY 224

Query: 313  ILDIDGRQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKL 372
                           +P   + TG  + ++I++  G++K    FS +   + GI P N  
Sbjct: 225  ---------------DPKDFFNTGSNIINSITLSTGSDKNQTYFSASTTNSDGILPNNSY 269

Query: 373  NRHTFNFRGTQR-LGDAVVIDATASY---------SNVRGFNPQRI-----SGDNSLIYG 417
            NR+ F  R T   L D + +D  A Y         S  + +NP         GDN     
Sbjct: 270  NRYNFTARNTTNFLNDKLTLDIGAQYIIQNNTNMVSQGQYYNPLPALYLFPRGDNFDEIR 329

Query: 418  LTWGYPTNFDL--DYWKDNYIDPVNGGRSTVDPFTTNQLFFRLNKFSQIQNENNFRGTIN 475
            L   Y TN+     YW        +GG S  +P+ T       N+  +  ++  +    +
Sbjct: 330  LYERYDTNYGFMKQYWPYG-----DGGLSLQNPYWTQ------NRIRRTSDKKRYMLNAS 378

Query: 476  AKTNFTKWLQLETSASL-NWYNTNKEDRELGQDPGF--KGGYYGSGIRNVIDSRYRAGLN 532
             K   T WL +    +L N    NK ++       F    G +   +R            
Sbjct: 379  LKWKVTDWLNITGRVNLDNSDYRNKTEKYASTLATFCSVNGGFEDAMRQERSLYTDLMAT 438

Query: 533  LNHKVNDFDLFLQLGSEVVRSQSKGANYGTSGGLKVPAQYRLSN---SINTPTVGEGTPN 589
            ++    DF L   +G  +  +  +    G +G L +P  + L+N   + N   + +G  +
Sbjct: 439  VDKTFGDFRLNTNIGMSLYHTSMQ--TIGFAGDLIIPNFFALNNINYAANYKPLPDGYDD 496

Query: 590  ISQVFASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALK 649
              +V + +A   +G+++ L L L  R +W+S L +SN +   +YFYP   L+ + T+   
Sbjct: 497  --EVQSIFANVELGWRSQLYLTLTGRNDWDSKLAFSNQS---SYFYPSVGLSAVLTEMFT 551

Query: 650  MPSVFSYGKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNP 709
            +P + SY K+R SY V       Y +N GY      Y +   N AN   Y  D+      
Sbjct: 552  LPKIISYAKVRGSYTVVASSFDRYLTNPGY-----EYNSQTHNWANPTVYPMDN------ 600

Query: 710  DLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQ 769
             LKP +  S EIG+ LK ++NR  LD T YR NT NQ   + +PS SG    ++ +G+VQ
Sbjct: 601  -LKPEKTKSWEIGLNLKFWENRFNLDATYYRSNTLNQTFKVDIPSSSGYNKAIVQTGNVQ 659

Query: 770  DQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAPGVTT-------------VQLEG 816
            +QGIE  L  T  +   F W +   +T NRNK+  LA G T              V   G
Sbjct: 660  NQGIELALGFTD-EWAGFRWASNATFTLNRNKVKRLAGGSTNPVTGELIDMPNMPVGWLG 718

Query: 817  GDGI--RTIAKVGGEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTR 874
             + +  R I   GG   T+   Y Y          N +   NNG   +  A TGG     
Sbjct: 719  KENVAPRVILTEGG---TMTDIYVY----------NELTKDNNGNIKVD-AQTGGLSMHT 764

Query: 875  ASNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTG 934
            A       E+ + +G+    +     N FTYK ++L  ++ A+ GG  +S T        
Sbjct: 765  A-------ETPTKVGNLNANYNLGWTNNFTYKGINLGVVLSARVGGLAYSATQ------- 810

Query: 935  NLKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRI 994
                   G     G ++ T       GV ++    D                        
Sbjct: 811  -------GVLDYYGVSSITANARDNKGVPMNNGKVD------------------------ 839

Query: 995  PTITWRYYNNSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIKMNGVKVYASAR 1054
               T +YY        G      + ++ V +++++LSY LPK +++ +    V      R
Sbjct: 840  ---TQKYYQTIGTGEGGYGRYYLYSATNVRLQELSLSYTLPKKWLNNVA--NVTFGLVGR 894

Query: 1055 NIGFLYNNAPDNLNVNDFTST 1075
            N+  +Y  AP +  ++  TS+
Sbjct: 895  NLWMIYCKAPFDPELSASTSS 915