Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1097 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  262 bits (669), Expect = 1e-73
 Identities = 251/941 (26%), Positives = 395/941 (41%), Gaps = 131/941 (13%)

Query: 28  SGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKYLGYLNKEVSVGD 87
           +GTVTD QG PL GVS+ +KGT  G  T  +G + +       +   Y+GY ++ +++ +
Sbjct: 119 TGTVTDAQGEPLIGVSILVKGTATGAITDMDGNFKIQAAKGDVLEISYIGYASQSITLAN 178

Query: 88  NNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQGLV 147
              + VT+ +D + L EVVVT LG +R  + L Y +  +  D + +    N + +L G V
Sbjct: 179 AQPLKVTMGEDTQTLDEVVVTALGIKREQKALSYNVQKVNNDALTSVKDANFVNSLNGKV 238

Query: 148 PGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARAGD------ 201
            G+ +Q    G   S +  +RG  S+ G +N  L VVDGV + + A    R GD      
Sbjct: 239 AGVNIQRSASGVGGSTRVTMRGNKSISG-DNNVLYVVDGVPIGNQA---DRTGDGTGFGS 294

Query: 202 -QDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGISFSHD 260
            +  G  + + N DDIES+SVL G S  ALYG+ A NGV+LI TKKG A K + I  S  
Sbjct: 295 GRTSGEGIANFNPDDIESVSVLTGPSAAALYGASAANGVILINTKKGEAGK-MRIDVSSS 353

Query: 261 ETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTILDIDGRQ 320
             F     +P  Q  YG                   S +Y +S+G KL+  +  D     
Sbjct: 354 VEFMTPLTMPKFQNRYGI------------------SGNY-YSWGDKLENQSSYD----- 389

Query: 321 ISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFR 380
                   P   +E G   N++ ++  GN+K    FS A   + GI P NK +R+    R
Sbjct: 390 --------PKDFFELGATFNNSFNLSTGNDKNQTYFSIAAVNSDGIVPNNKYHRYNVTLR 441

Query: 381 GTQR-LGDAVVIDATASYSNVRGFNPQRISGD---NSLIYGLTWGYPTNFDLDYWKDNYI 436
            T + L D + +DA+ASY  +R +    IS     N ++    +    +F+ + + + Y 
Sbjct: 442 NTAKFLNDKLTLDASASY--IREYYNNMISYGTYFNPIVGAYLYPRGEDFEKEKYFERYN 499

Query: 437 DPVNGGRSTVDP----FTTNQLFFRLNKFSQIQNENNFRGTINAKTNFTKWLQLETSASL 492
             +   +    P          ++   +  + + ++ +    + K + T +L +     L
Sbjct: 500 SELGYSQQQWSPGDFGMDIQNPYWIAYRNIRPEVKDRYMLYASLKYDITNYLNVAGRVRL 559

Query: 493 NWYNTNKEDRELGQDPGFKGGYYGS-GIRNVIDSRYRAGLNLNHKVNDFDLF---LQLGS 548
           +   T KED+             G     N    +  A + +N      +++   +  G+
Sbjct: 560 DNTYTEKEDKRYASTINTYASTNGRYTYSNETFRQKYADIMVNFDKQFAEIYHATINAGT 619

Query: 549 EVVRSQSKGANYGTSGGLKVPAQYRLSNSINTPTVGEGTPNIS--QVFASYAQGSIGYKN 606
                 +KG  YG    L VP ++  SN   T +    T   S  + FA +A   + + +
Sbjct: 620 SFEEYDTKGRGYG-GQLLLVPNKFVYSNIDPTQSTASQTGGDSRRRNFAVFASAELSWNS 678

Query: 607 WLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDAL------KMPSVFSYGKLR 660
            L L L  R +  S LV S+       FYP   L+ I T+ L      K+     + K+R
Sbjct: 679 ALYLTLTGRADKPSQLVNSDDPW---IFYPSVGLSAIVTELLPNNIKEKLEPTLGFLKVR 735

Query: 661 ASYVVTGG---------GTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDL 711
           ASY   G          GT+ +    G +     Y   N                    L
Sbjct: 736 ASYTEVGSPIPYTGLTPGTLTHELEGGTFKPFKYYPISN--------------------L 775

Query: 712 KPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQ 771
           K  R  S E+G++ K F N +    T Y  NT NQ++  ++   S  +   + +G+VQ++
Sbjct: 776 KAERTRSYEVGLDSKWFNNTITFGVTYYHSNTYNQLLKATL--GSNFEYMFVQAGNVQNR 833

Query: 772 GIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAPGV------TTVQLEGGDGIRTIAK 825
           G+E  L G   K   F+++  F  T N+NKII LA  V      T + L      R   +
Sbjct: 834 GLELSL-GFDKKFGDFNYNTTFTATTNKNKIIQLARDVLNPVTNTLIDLTDIQVGRFRLR 892

Query: 826 VGGEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLESE 885
            GGE  T+     YA    +    N ID                  Y           S 
Sbjct: 893 EGGEIGTV-----YANEWLKRDGDNYID------------------YQPGQALTTETTSP 929

Query: 886 STIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDT 926
             +GS  PK+    ++ F+YK  +L+ L  A+ GG   S T
Sbjct: 930 YKLGSVNPKWNLGWQHGFSYKGFNLNLLFTARIGGIAISKT 970