Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 920 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  248 bits (632), Expect = 2e-69
 Identities = 260/1007 (25%), Positives = 419/1007 (41%), Gaps = 164/1007 (16%)

Query: 97   DDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGT 156
            +D + L EVVVT LG +R  + L Y +  +KGD++      N I AL G V G+ +   +
Sbjct: 3    EDTQTLDEVVVTALGIKREQKALSYNVQQVKGDELTNIKDANFINALSGKVAGVTINASS 62

Query: 157  GGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARAGD---QDFGNVLKSINS 213
             G  ++ +  +RG  SL  ++N  L V+DG+ + +        G    Q   N +  IN 
Sbjct: 63   AGAGAAARVVMRGTKSLEKNDNA-LYVIDGIPMFNVNSGDNAGGTMNKQPGSNSVADINP 121

Query: 214  DDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGISFSHDETFDNAYALPDMQ 273
            +DIES+++L G S  ALYGS A NGV+LITTKKG   K + IS+S+  +F +   +P  Q
Sbjct: 122  EDIESMTILTGPSAAALYGSDASNGVILITTKKGTVGK-VQISYSNSTSFSSPMMMPKFQ 180

Query: 274  QEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTILDIDGRQISNSILNNPLSLY 333
              YG+        +G  G           S+G  +D  +  D             P   +
Sbjct: 181  NIYGNR-------EGELG-----------SWGSLMDTPSNFD-------------PSDFF 209

Query: 334  ETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQRLGD-AVVID 392
             TG    +  ++  G E+     S +   + GI P N  NR+ F+ R T +  D  + +D
Sbjct: 210  NTGMTEMNGFTLTTGTEQNQTYASVSTTNSTGILPNNAYNRYNFSIRNTAKFCDNKLSLD 269

Query: 393  ATASY-----SNVRG----FNPQRI-----SGDNSLIYGLTWGYPT--NFDLDYWKDNYI 436
              A Y      N+ G    FNP         G+N     +   Y    N  + YW ++  
Sbjct: 270  LGAQYIIQNNKNMVGSGQYFNPLVSLYLFPRGENFQEVQMYERYSEARNLMVQYWPESIF 329

Query: 437  DPVNGGRSTVDPFTTNQLFFRLNKFSQIQNENNFRGTINAKTNFTKWLQLETSASLNWYN 496
                              ++ +N+     ++  +    + K + T W+ +     ++  +
Sbjct: 330  GT---------DLDMQNPYWIMNRMQNELSKRRYMFNASLKWDITDWVNVTGRVRVDNSD 380

Query: 497  TNKEDRELGQDPGF-----KGGYYGSGIRNVIDSRYRAGLNLNHKVNDFDLFLQLGSEV- 550
            ++  ++      G        GYYG   +N  D    A +  +   N FD  L L + V 
Sbjct: 381  SDSYEKYYASTRGTFTESSSKGYYGHTKQN--DRSVYADVMASINKNFFDDKLSLNATVG 438

Query: 551  --VRSQSKGANYGTSGGLKVPAQYRLSN-SINTPTVGEGTPNISQVFASYAQGSIGYKNW 607
              +    + A Y   G  ++P  +   N ++NT    E   +  QV + +A   +G+ + 
Sbjct: 439  ASINDIQEDAMYLKGGLEQIPNFFHYGNINVNTSKRNESKWH-DQVQSVFASAELGWNHQ 497

Query: 608  LTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLRASYVVTG 667
            L L +  R +W S L +   T   +YFYP   L+W+ ++++K+P   SY K+R S+    
Sbjct: 498  LYLTVTGRNDWASQLAF---TSKGSYFYPSVGLSWLVSESVKLPKAISYLKVRGSWAEVA 554

Query: 668  GGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDLKPLRAFSKEIGIELKM 727
                   S+   YL    Y   N  T N  +Y        N +LKP    S E+G+  K 
Sbjct: 555  -------SSPNRYLTQMQY-TYNEQT-NTYEYPASHY---NTNLKPENTKSWELGVNAKF 602

Query: 728  FKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSF 787
              NR+ LD T YR NT NQ   +   + SG +N ++ +G++Q+QGIE  L G        
Sbjct: 603  LGNRINLDMTFYRSNTFNQTFYVDASASSGYKNNIVQTGNIQNQGIELAL-GYSDTFDKV 661

Query: 788  SWDAFFNYTRNRNKIISLAPGVTTVQLEGGDGIR-------TIAKVGGEYSTLVAAYGYA 840
                 F YT N+NKI+SLA G   +  E G+ I        T+   GG    L       
Sbjct: 662  KVSTNFTYTLNQNKIVSLANG--AINPETGEAIEMEYYSKGTLGTSGGPTLRLY------ 713

Query: 841  KYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLESES--TIGSTLPKFYGS 898
                   NG+  D   N +   SP    G  +   SN +  +E+     +GS LPK+Y  
Sbjct: 714  ------ENGSMGDIYINQRLRQSP---NGYIWKDPSNGSLAIENTEYRKVGSILPKYYLG 764

Query: 899  IRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQ 958
                  +K  +L      +FGG V SDT                  ++  G + + A  +
Sbjct: 765  WNGSVAWKGWNLGFAFTGRFGGLVVSDTQ---------------AMIDKYGVSESSAVAR 809

Query: 959  EIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNGWGNGIRERGAF 1018
            + G              GV VG  S   A +   ++ T    YY               +
Sbjct: 810  QAG--------------GVWVGD-SKVDAEEYYSKVTTAVGTYY--------------TY 840

Query: 1019 KSSWVAVRDITLSYDLPKA-FVSKIKMNGVKVYASARNIGFLYNNAP 1064
             ++ + + +++LSY LPK  F + + M    +  + +N+  +Y  AP
Sbjct: 841  SATNIRLSELSLSYQLPKTWFKNHVNMT---LGLTGKNLWMIYCKAP 884