Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1062 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  408 bits (1049), Expect = e-117
 Identities = 333/1138 (29%), Positives = 517/1138 (45%), Gaps = 123/1138 (10%)

Query: 6    LTSLSILLLCMATISAFAQK----------------TVSGTVTDNQGLPLAGVSVFLKGT 49
            L S+S+LLL  A  +A +                  T  G V D  G  + G SV +KGT
Sbjct: 5    LKSVSVLLLLFAMPAAISYAASENGATSVSVTQQNGTCKGVVKDKAGEAVIGASVVVKGT 64

Query: 50   TKGTSTSTEGKYTLS-VPSNSTIVFKYLGYLNKEVSVGDNNTINVTLLDDAKALGEVVVT 108
            T G  T  +G + LS VP  +TI   Y+GY  +EV       +++TL +D + L EVVVT
Sbjct: 65   TNGVITDLDGNFVLSNVPDGATIQISYVGYTPQEVKF-TGKPLDITLQEDTQTLDEVVVT 123

Query: 109  GLGEERNTRNLGYAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIR 168
             LG +R  R+LGY+   + G     A T N   AL G + G+ V     GP  S +  IR
Sbjct: 124  ALGIKRQKRSLGYSTTTVGGKDFTEARTTNIGNALSGKIAGVSVSGNATGPGGSSRVVIR 183

Query: 169  GASSLYGSENTPLIVVDGVILSDDAMSPA-RAGDQDFGNVLKSINSDDIESISVLKGGSV 227
            G +SL G+ N PL V+DGV   +  +  A + G +D G+ L SIN DDI  I VLKG + 
Sbjct: 184  GNASLTGN-NQPLYVIDGVPFDNTNIGSAGQWGGKDMGDGLSSINPDDIADIQVLKGAAA 242

Query: 228  TALYGSRAINGVLLITTKKGFAQKGLGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIK 287
            +ALYG R  NG +LITTK G   K + + F+++  FD  Y   D Q  YG G       +
Sbjct: 243  SALYGYRGGNGAILITTKSGQKGKPVSVEFNNNLAFDVIYDYRDFQNVYGQG------TQ 296

Query: 288  GANGMN-QINSASYGFSFGPKLDGSTILDIDGRQISNSILNNPLSLYETGRYVNSNISMQ 346
            G   ++  +  A+   S+G  +DG   ++  G + + S ++N  + Y TG    + +++ 
Sbjct: 297  GNRPLSADVAKATETSSWGEVMDGKKAVNFLGNEYAYSPVDNWKNFYRTGINNTTTLAVS 356

Query: 347  GGNEKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQRLGDAVVIDATASYSNVRGFNPQ 406
            G ++K ++RF  +N   KGI P + +++   N   T  +   V +   A+Y   +     
Sbjct: 357  GASDKISYRFGVSNMAVKGILPNSSISQQGINMNTTYDISSKVHLMVNANYVFDKNKGRS 416

Query: 407  RISGDNS-----LIY-----GLTWGYPTNFDLDYWKDNYIDPVNGGRSTVDPFTTNQLFF 456
             +S  NS     L+Y      + W    N D D+        + GG +       N  ++
Sbjct: 417  NLSDGNSNTNAALLYHANSFDIRWMERENPDCDWGTGADGKELLGGTNGY----FNNPYW 472

Query: 457  RLNKFSQIQNENNFRGTINAKTNFTKWLQLETSASLNWYNTN-KEDRELGQ-DPGFKGGY 514
               + +   N N   G +  K +   WL ++ + + + YN    E + +G   P    GY
Sbjct: 473  LQYRVTNETNRNRLTGGMTLKYDIFDWLYIQGAVTRDGYNLEYSEVKPIGSASPEDPRGY 532

Query: 515  YGSGIRNVIDSRYRAGLNLNHKVNDFDLFLQLGSEVVRSQSKGANYGT---SGGLKVPAQ 571
                 +N  +      +  N    D+ +    G    R+ +K   YG    +    VP  
Sbjct: 533  IKEYTQNFSEMNLNYLIGFNKTFGDWSVGATFGGNRQRNITK--KYGLDDKASSFFVPDF 590

Query: 572  YRLSNSINTPTVGEGTPNISQVFASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNY 631
            Y  SN+       E T    +V + Y    +GYKN + LNL  R +W STL       N 
Sbjct: 591  YSSSNTAKHVYKKEYTEY--RVNSIYGTADLGYKNQVFLNLTGRNDWFSTL----DPDNN 644

Query: 632  NYFYPGADLAWIFTDALKMPSVFSYGKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNS 691
            +YFYP   ++W+F+D  K P  F++GK+RASY     GT  Y++   Y  K  NYQ+   
Sbjct: 645  HYFYPSIGMSWVFSDTFKTPDWFTFGKVRASYAAASNGTKAYQNLLTY--KVDNYQSNGQ 702

Query: 692  NTANIEQYGFDSQTLGNPDLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLS 751
                I     ++ T+ N  LKP++    EIG+ L    NRL LD   Y K TK+ I+ ++
Sbjct: 703  PVVTI-----NNSTVPNKGLKPVQISEWEIGLNLSFLDNRLSLDAAYYVKTTKDDIVQVT 757

Query: 752  VPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAPGVTT 811
                SG ++ + N G++++ G+E +++  P+ T+ F+W++ FN   N + +  L    T 
Sbjct: 758  TSGASGFESAIQNVGEIRNNGVEVMVNAVPVHTKDFNWNSTFNIAYNSSDVKYLGIDGT- 816

Query: 812  VQLEGGDGIRTIAKVGGEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAF 871
                 G+ I+ +   G       A         ++  G+P      G+ V       G  
Sbjct: 817  -----GEKIKRLTLDG-------ANSRVGSVSVQNILGHPY-----GELV-------GYE 852

Query: 872  YTRASN----YANGLESES----TIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVF 923
            Y R S+    + NGL   S     +G+ + K  G  RN FTYK+++LS LID K G  +F
Sbjct: 853  YKRTSDGQVIFENGLPVHSDEVQVLGNGVYKVTGGWRNEFTYKNITLSFLIDFKAGAKMF 912

Query: 924  SDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMS 983
            S T       G  KNTL GR  +  GT     GN   GV+ DG    G + N V V    
Sbjct: 913  SGTNLSLYSNGLHKNTLQGRGADGKGTM---VGN---GVMSDG--KGGYVKNTVAVSAQD 964

Query: 984  HQQAIDKGLRIPTITWRYYNNSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSK-I 1042
            + QAI                       I E   + +S++ +R++++ Y LP+A+++K  
Sbjct: 965  YWQAIT-------------------SQNIAEEFVYNASFIKLRELSVGYTLPQAWLNKQT 1005

Query: 1043 KMNGVKVYASARNIGFLYNNAPDNLNVNDFTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
             + GV +    RN+  +  +  DN++     + G        G P  R  G  +N  F
Sbjct: 1006 LIKGVTLSLVGRNLWTILKHT-DNIDPESAYNNGNAQGLELNGYPATRNVGFNVNVKF 1062