Pairwise Alignments

Query, 633 a.a., ATP-dependent RNA helicase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  339 bits (869), Expect = 2e-97
 Identities = 195/547 (35%), Positives = 309/547 (56%), Gaps = 15/547 (2%)

Query: 5   FQLLGISDDVVNAVKDLGFETPTPIQEQSIPVLLEGTNDFVGLAQTGTGKTAAFGLPLLE 64
           F  LGI   V+ A+  +G+E P+PIQ Q+IPV+L G +D +G AQTGTGKTAAF LP+L 
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGG-HDMIGQAQTGTGKTAAFALPILS 66

Query: 65  LIDFKVNKPQALILCPTRELCLQIANDLKNFSKNVANAHVVAVYGGANIMQQLREIRQGV 124
            ID    + QALIL PTREL LQ+A   + +SK +    VVAVYGGA +  QL+ IRQG 
Sbjct: 67  KIDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGA 126

Query: 125 QIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQDDINDILSTTPDDKKTWLF 184
           Q++VATPGR++D + R +   + ++++VLDEADEML +GF DD+  I    P+ ++T LF
Sbjct: 127 QVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLF 186

Query: 185 SATMPAEVRRIAKNYMDNPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFNPEI 244
           SAT+P  +R IA+ ++  P  + +  K      IE  + +V A  K  A+ R+++     
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFD 246

Query: 245 FAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIATDVAA 304
             + F +TK  T D+A  L   GY A AL+GD++Q QR++V++  ++  + +++ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 305 RGIDVNNVTHVVNYSLPDEIESYTHRSGRTGRAGKTGISICIINSKELGKIRQLERIIGK 364
           RG+DV  +THV N  +P + ESY HR GRTGRAG+ G ++ ++  +E   ++ +ER+  +
Sbjct: 307 RGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQ 366

Query: 365 QFTKAELPTGFDVCEKQLFSLVHKVHNV-----EVNNEQIDQYI------PRIMDEFADL 413
           +  +A LP    V + ++  L + +  +       + E +D+ +      PR +   A L
Sbjct: 367 KVAEARLPNAQQVLDARIKKLTNSLAPLVADAEATHGELLDKLVADIGCSPRAL-AAALL 425

Query: 414 SKEDVIKRFASLEFNRFLDYYSKAPDLNAAVGDDRGADRGERGGRGRG--SEGYTRLFIN 471
            K    +     E  R       +         DR    G+R  R     +EG  R    
Sbjct: 426 RKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRARCRTP 485

Query: 472 LGSVDEFTRGDMLSFICNNGKIGGKSVGKIDLKGVFSFFEVEDDVADKVFEGFKSVEFNG 531
           LG+ D     ++L  I N G +  +++G+I ++  FS  E+ +D  +++    K     G
Sbjct: 486 LGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLGKLKDTRVGG 545

Query: 532 RQVRIEK 538
           +Q+++ +
Sbjct: 546 KQLKLRR 552