Pairwise Alignments

Query, 1001 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1001 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  477 bits (1228), Expect = e-138
 Identities = 330/1023 (32%), Positives = 533/1023 (52%), Gaps = 69/1023 (6%)

Query: 9    SVLAAFCLLTINVALAQNITVKGKVIDGGDKTPLPGVTILVKGTQNGTQTDVNGNYSISV 68
            ++LA F  L+   A AQ  T  G+V+D   K PL GV++  KGT NG  TD++GN++++V
Sbjct: 18   AILAVFFSLS---ASAQQFTASGQVLDA-QKEPLIGVSVQEKGTTNGAITDLDGNFTLTV 73

Query: 69   PGDATLVFNFVGYTALEQAVNNQTTLNVSLASSTQQLEQVVVVGYGTQRKIDVTGAVASV 128
              +ATL+F++VGY + EQ  + Q  + V+L    + LE+VVV+GYG+ ++ DVT A+++V
Sbjct: 74   QSNATLIFSYVGYKSQEQKASRQ--MKVTLQEDNEVLEEVVVIGYGSVKRKDVTTAISTV 131

Query: 129  KGEDISKQASVNPVGALQGKVAGVSITN-TGTPGGSPTITIRGTGTIYGKSVPLYVVDGV 187
              +D+  +  V+   A+QGK AG+S+   +GTPGG  +I +RGT ++ G + PLYVVDGV
Sbjct: 132  STKDLDVRPIVSAGQAIQGKAAGISVIQPSGTPGGEMSIRVRGTTSMNGSNDPLYVVDGV 191

Query: 188  WYDDINFLNPADIANISILKDASAQSIYGIRAANGVVLVTTNKGKKGDAVINYNGTVGFQ 247
              D+I FL+P DI ++ ILKDAS+ SIYG RAANGV+L+TT  G  G A ++     G  
Sbjct: 192  PVDNIKFLSPNDIESMQILKDASSASIYGSRAANGVILITTKAGATGKAKVSLTAQFGLN 251

Query: 248  KVTNQVEMANASEYAAAVNEAYALQGAQPLFANTNLGEGTNWYDVVLREALVTNHQLSIS 307
            KV ++VE  NA++Y    +E   +           L + T+W+D   +   + N+Q+++S
Sbjct: 252  KVADKVESLNAAQYKELQDEIGLVS------LPDGLPDRTDWFDETYKTGKMQNYQVAVS 305

Query: 308  GGSEKSTYNLSLGYLNQDGIVKNNNYKRYTARLSNDFQIFQPLKIGYNVTATSSKSKDAP 367
             G+EK  Y LS GYL++ GI+  + YKRY  R++ + QI   L +  N++ +   S    
Sbjct: 306  NGNEKMKYYLSAGYLDEKGILDISYYKRYNFRVNLENQIRSWLTVSANISYSDYTSNGGG 365

Query: 368  ST--------IFRALYAASPVVPVFNA--DGSYGDPNAFNLGNGSN-MNPQATLDFFNQQ 416
            +         +  A+       P+++A     Y + N + +GN +N +   A       +
Sbjct: 366  AMGTGANRGGVVLAVINTPTYAPIWDALNPNQYYN-NFYGVGNITNPLENMARAKNNKDK 424

Query: 417  TTKYKVTGNVYAELKFLKDFTFKTSFGGDFGQEEVRGYI-PVYKASNTQQNTNSRLDIDR 475
              +   +GNV   L  L +  FK++   D        ++ P+  A    +N       +R
Sbjct: 425  ENRLLASGNVL--LTLLPELKFKSTLTLDRRNAVNTTFLDPISTAWG--RNQYGEASDNR 480

Query: 476  IENRNWIIENTLTYDKKWTDHSLTVLVGQTAQRNKMYTINADALNVPYTSEGDLYLALGN 535
              N     +N  TY+K +  H L V+ G ++  +  Y+ N+      Y ++    L   N
Sbjct: 481  NMNTVLTFDNVFTYNKNFKRHGLEVMAG-SSWTDSDYS-NSWINGSHYRNDLIQTLNAAN 538

Query: 536  AASRNITDSGELST-FASYFARVNYSYKNRYLLNASIRRDGASQFFGSDNLWGNFPSIGA 594
              + + T +G       S+F RV Y++ ++YLL A++R DG+S+    D+ WG FPS  A
Sbjct: 539  KIAWDNTGTGASQWGIMSFFGRVAYNFDSKYLLTANLRADGSSKLH-PDHRWGVFPSFSA 597

Query: 595  GWVISNEEFMKDQKIFSNLKLRGSWGKVGN-AGVPFNPSTQTVD----QSAGLVAIFGGL 649
             W +S+E+FM D     + K+RG WG+ GN +G+      Q  +    +   + A     
Sbjct: 598  AWRVSSEKFMADLTWIDDFKIRGGWGQTGNQSGIGDYAYLQRYNIGRIEWFKVAAEGDTT 657

Query: 650  PYTGA----SIRSIVPPFLLWERSAGTDVGLEMGFLNNRLTVEADYYSRKTEQAIFDIPV 705
             Y  A    S  ++    L WE +  T++GL++  LN RLT   DYY +KT+  + ++ +
Sbjct: 658  DYANAVPTISQANLRTSDLTWETTTQTNIGLDLTVLNGRLTFNMDYYYKKTKNMLMNVSL 717

Query: 706  FGNLGTANSTLIA-NQADIQNRGFEFSATWADKTEGGFSYSVSGNVGINNNKVLNVTSGS 764
                G A +T IA N+ ++ N+GFE + +  +   G F++    N+  N NK+  +    
Sbjct: 718  --PAGAAAATSIARNEGEMTNKGFELTISSKNFRGGAFTWDTDFNISFNRNKLTKLELQK 775

Query: 765  NPIYRGGAGITSGYLSTRTVNNRPIGEFFGYQVEGVFQTDAEAAAWPGFKRGDFKYADIN 824
                   A + + Y+  R    R +G F+GY  +GV   D E         G+  Y D++
Sbjct: 776  VYYDAKTADVVNDYV-VRNEPGRALGGFYGYISDGV---DPET--------GELMYRDLS 823

Query: 825  GDGIIDLRDRVVLGNPNPKFTYGVNTNFAYKNFDLTLDIQGVADVDVFNAN---LSNRFG 881
            GDG I   DR  +G+PNP FTYG+   F++K F+L++ IQG    D+FNA+       + 
Sbjct: 824  GDGKISTSDRTYIGDPNPDFTYGLTNTFSWKGFNLSVFIQGSYGNDIFNASRIETEGMYD 883

Query: 882  NENYTKDFISNRWTSAGTSNTYASASLASGLNNAPNSFYVEKGDYIRLRNIQLGYTLPQV 941
             +N +   + NRW   G       A+    LN   +++++E G Y+RL+++ L Y     
Sbjct: 884  GKNQSTK-VLNRWKIPGQITNVPKANFKL-LN---STYFIEDGSYLRLKDVSLSYNFKGK 938

Query: 942  ISNKMKMQRLRLFVNAQNAVNIFGYKGFSPEV---GGAPTNAGIDTNVYPLFATYNFGVN 998
            +  K  + RL+ +  A N +    Y G  PEV   G + T  GID   YP   +Y FG+N
Sbjct: 939  LLQKWGITRLQPYFTATNLLTWTSYSGMDPEVNQWGNSGTVQGIDWGTYPHSRSYVFGIN 998

Query: 999  VTF 1001
            V F
Sbjct: 999  VEF 1001