Pairwise Alignments

Query, 1001 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1041 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  522 bits (1345), Expect = e-152
 Identities = 343/1063 (32%), Positives = 546/1063 (51%), Gaps = 92/1063 (8%)

Query: 2    KRIFTRISVLAAFCLLTINVALAQNITVKGKVIDGGDKTPLPGVTIL-VKGTQNGTQTDV 60
            K++   +  L AF    ++    QNITVKG V    D  P+ G +++    T NGT TD 
Sbjct: 8    KKLLCSVCFLFAF----MSALWGQNITVKGNVTSKTDGQPIIGASVVETTATTNGTITDF 63

Query: 61   NGNYSISVPGDATLVFNFVGYTALEQAVNNQTTLNVSLASSTQQLEQVVVVGYGTQRKID 120
            +GN+++SVP ++TL   ++GY  +   V     +NV L   TQ +++VVV GY TQRK D
Sbjct: 64   DGNFTLSVPVNSTLKITYIGYKPV--TVKAAAIVNVLLEEDTQMVDEVVVTGYTTQRKAD 121

Query: 121  VTGAVASVKGEDISKQASVNPVGALQGKVAGVSITNTGTPGGSPTITIRGTGTIYGKSVP 180
            +TGAV+ VK ++I KQ   NPV ALQG+V G++IT  G P GS T+ IRG GT+   + P
Sbjct: 122  LTGAVSVVKVDEIQKQGENNPVKALQGRVPGMNITADGNPSGSATVRIRGIGTL-NNNDP 180

Query: 181  LYVVDGV-WYDDINFLNPADIANISILKDASAQSIYGIRAANGVVLVTTNKGKKGDAVIN 239
            LY++DGV     ++ LN  DI +I +LKDA++ SIYG RAANGV+++TT +GKKG   IN
Sbjct: 181  LYIIDGVPTKAGMHELNGNDIESIQVLKDAASASIYGSRAANGVIIITTKQGKKGQIKIN 240

Query: 240  YNGTVGFQKVTNQVEMANASEYAAAVNEAYALQGAQP--------------------LFA 279
            ++ +V      +++ + N  +Y  A+ +AY   G  P                    L+ 
Sbjct: 241  FDASVSASMYQSKMNVLNTEQYGRAMWQAYVNDGENPNGNALGYAYNWGYNADGNPVLYG 300

Query: 280  ----------NTNLGEGTNWYDVVLREALVTNHQLSISGGSEKSTYNLSLGYLNQDGIVK 329
                      NT     T+W+D + R  ++  + LS+S GSEK +   SLGY    G++K
Sbjct: 301  MTLSKYLDSKNTMPVADTDWFDEITRTGVIQQYNLSVSNGSEKGSSFFSLGYYKNLGVIK 360

Query: 330  NNNYKRYTARLSNDFQIFQP-LKIGYNVTATSSKSKDAPSTIFRALYAASPVVPVFNADG 388
            + ++ R++AR+++D+++    L IG + T   +    AP  I          +PV+ +DG
Sbjct: 361  DTDFDRFSARMNSDYKLIDDILTIGQHFTLNRTSEVQAPGGIIETALDIPSAIPVYASDG 420

Query: 389  SYGDPNAFNLGNGSNMNPQATLDF-FNQQTTKYKVTGNVYAELKFLKDFTFKTSFGGDFG 447
            S+G P     G     NP+A L++  + + T +++ G+ Y  L   K F  +++FG D+ 
Sbjct: 421  SWGGPVG---GWPDRRNPRAVLEYNKDNRYTYWRMFGDAYVNLTPFKGFNLRSTFGLDYA 477

Query: 448  QEEVRGYIPVYKASNTQQNTNSRLDIDRIENRNWIIENTLTYDKKWTDHSLTVLVGQTAQ 507
             ++ R +   Y+      N  S ++  +     W+     TY  +   H   V++G    
Sbjct: 478  NKQARYFTYPYQEGTQTNNGKSAVEAKQEHWTKWMWNAIATYQLEVGKHRGDVMIGMELN 537

Query: 508  RNKMYTINADALNVPYTSEGDLYLALGNAASRNITDSGELSTFASYFARVNYSYKNRYLL 567
            R      +    +    +   ++   G+  ++    +GE  +  S+F ++NYSY +RYLL
Sbjct: 538  REDDSHFSGYKEDFSILTPDYMWPDAGSGTAQ-AYGAGEGYSLVSFFGKMNYSYADRYLL 596

Query: 568  NASIRRDGASQFFGSDNLWGNFPSIGAGWVISNEEFMKDQKIFSNLKLRGSWGKVGNAGV 627
            + ++RRDG+S+ FG ++ +  FPS+  GW I+ E FMK+     +LKLR SWG+ GN  +
Sbjct: 597  SLTLRRDGSSR-FGKNHRYATFPSVSLGWRITQENFMKELTWLDDLKLRASWGQTGNQEI 655

Query: 628  PFNPSTQTVDQSAGLVAIFGGLPY------TGASIRSIVP----------PFLLWERSAG 671
                       + G    FGG  Y      TG++   ++P            + WE +  
Sbjct: 656  SNLARYTIYAPNYGTTDSFGGQSYGTAYDITGSNGGGVLPSGFKRNQIGNDNIKWETTTQ 715

Query: 672  TDVGLEMGFLNNRLTVEADYYSRKTEQAIFDIPVFGNLGTANSTLIANQADIQNRGFEFS 731
            T+VG++       L    +YY +K    + ++   G LG   S  I N   ++N+GFEF+
Sbjct: 716  TNVGIDFSLFKQSLYGSLEYYYKKATDILTEMAGVGVLGEGGSRWI-NSGAMKNQGFEFN 774

Query: 732  ATWADKTEGGFSYSVSGNVGINNNKVLNV--TSGSNPIYRGGAGITSGYLSTRTVNNRPI 789
              + +KT  G +Y ++GN+    N++L +  T  +N  + GG G+       ++V     
Sbjct: 775  LGYRNKTAFGLTYDLNGNISTYRNEILELPETVAANGKF-GGNGV-------KSVVGHTY 826

Query: 790  GEFFGYQVEGVFQTDAEA---AAWPGFKRGDFKYADINGDGIIDLRDRVVLGNPNPKFTY 846
            G   GY  +G+F++  E    A   G   G  +Y DI+ +G+ID RD+  + +P P F+Y
Sbjct: 827  GAQVGYIADGIFKSQDEVDNHATQEGAAVGRIRYRDIDHNGVIDERDQNWIYDPTPSFSY 886

Query: 847  GVNTNFAYKNFDLTLDIQGVADVDVFN--ANLSNRFGNENY----TKDFISNRWTSAGTS 900
            G+N    YKNFDLT+  QGV  VD+ +     S+ +   N         + N W S    
Sbjct: 887  GLNIYLEYKNFDLTMFWQGVQGVDIISDVKKKSDFWSASNVGFLNKGTRLLNAW-SPTNP 945

Query: 901  NTYASASLASGLNNAP--NSFYVEKGDYIRLRNIQLGYTLPQVISNKMKMQRLRLFVNAQ 958
            N+   A   S  NN    ++++VE G +++LRNIQLGYT+P VIS KM+M RLR + +AQ
Sbjct: 946  NSDIPALTRSDTNNEQRVSTYFVENGSFLKLRNIQLGYTVPAVISKKMRMDRLRFYCSAQ 1005

Query: 959  NAVNIFGYKGFSPEVGGAPTNAGIDTNVYPLFATYNFGVNVTF 1001
            N + I   K F+   G  P N       YP+     FG+N+ F
Sbjct: 1006 NLLTIKS-KNFT---GEDPENPNFS---YPIPVNITFGLNIGF 1041