Pairwise Alignments

Query, 1001 a.a., SusC/RagA family TonB-linked outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1146 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  517 bits (1331), Expect = e-150
 Identities = 331/1033 (32%), Positives = 539/1033 (52%), Gaps = 73/1033 (7%)

Query: 28   TVKGKVIDGGDKTPLPGVTILVKGTQNGTQTDVNGNYSI-SVPGDATLVFNFVGYTALEQ 86
            TV+G V+D   + P+ G ++ +KG  +GT TD++G YS+ +VP  ATL  +++GY  +  
Sbjct: 126  TVQGVVVDDKGE-PVIGASVQIKGEGSGTITDMDGRYSLMNVPESATLTISYIGYKTVSL 184

Query: 87   AVNNQTTLNVSLASSTQQLEQVVVVGYGTQRKIDVTGAVASVKGEDISKQASVNPVGALQ 146
            +  ++ T  ++L   ++ +++VVVVGYG QRK DV+ +++SVK E I++ ++ +   AL 
Sbjct: 185  SAKDKNTAKITLTEDSKMIDEVVVVGYGVQRKRDVSTSISSVKAEQIAEVSASDFRQALA 244

Query: 147  GKVAGVSITN-TGTPGGSPTITIRGTGTIYGKSVPLYVVDGVWYD-DINFLNPADIANIS 204
            GK+ GV +T  +G P GS +I +RG  T+   S PLY++DGV  +     LN  D+ ++ 
Sbjct: 245  GKMPGVQVTQPSGDPEGSVSIRVRGISTVNAGSDPLYIIDGVPVERGFANLNNNDVESVE 304

Query: 205  ILKDASAQSIYGIRAANGVVLVTTNKGKKGDAVINYNGTVGFQKVTNQVEMANASEYAAA 264
            +LKDAS+ +IYG R +NGV+++TT +G+     + Y+G  G Q ++ ++ M NA ++A  
Sbjct: 305  VLKDASSAAIYGSRGSNGVIIITTKQGQSEKMKVQYDGYYGIQSISKKLPMLNAYQFAEF 364

Query: 265  VNEAY------ALQGAQP-----------------LFANTNLGEG---TNWYDVVLREAL 298
              + +      A  G  P                 LF   N  +G   T+W D + R A 
Sbjct: 365  AKDGHDNSYLDANPGGSPNDPNGMRPNSWERIPTELFPYLNGDQGLTDTDWQDAIFRSAA 424

Query: 299  VTNHQLSISGGSEKSTYNLSLGYLNQDGIVKNNNYKRYTARLSNDFQIFQPLKIGYNVTA 358
             T+H +SISG  +   Y +S  Y +++GI+ N+++K+Y+ R++ D + ++ LK G N + 
Sbjct: 425  TTSHNVSISGRGKTVGYFISANYYDKEGIIINSDFKKYSMRMNLDGK-YKRLKFGLNFSP 483

Query: 359  TSSKSKDAPST----IFRALYAASPVVPVFNADGSYG--DPNAFNLGN----GSNMNPQA 408
            + S S    ++    I ++     PV PV+N+DGSY       + +GN     + +NP A
Sbjct: 484  SYSTSNRVDASGSNGIVQSALMMPPVWPVYNSDGSYNYQGNGYWRIGNDYQHNAVLNPVA 543

Query: 409  TLDFFNQQTTKYKVTGNVYAELKFLKDFTFKTSFGGDFGQEEVRGY----IPVYKASNTQ 464
              +  +    +  + G V+AEL+  K  T+  SFGGD+       Y    +P+       
Sbjct: 544  MANLQSDVVDRMAIVGKVFAELELFKGLTYNISFGGDYYGSHNDQYRSSELPLLGQKYYD 603

Query: 465  QNTNSRLDIDRIENRNWIIENTLTYDKKWT-DHSLTVLVGQTAQRNKMYTINADALNVPY 523
              +N           NW+IEN + Y+     DHS+  ++ Q+AQ+      N  A + P 
Sbjct: 604  IKSNPTAYSSSGFYFNWLIENKINYNTVINEDHSINAVLVQSAQKETYKGDNVTATDFP- 662

Query: 524  TSEGDLYLALGNAASRNITDSGELSTFASYFARVNYSYKNRYLLNASIRRDGASQFFGSD 583
                 +    G    +  +D  + S  ASY ARV YSYK +Y+ + +IR DG+S+ FG +
Sbjct: 663  --NDYIQTISGGTVIKGASDKTQWS-IASYLARVQYSYKGKYMASGAIRADGSSR-FGKN 718

Query: 584  NLWGNFPSIGAGWVISNEEFMKDQKIFS---NLKLRGSWGKVGNAGVPFNPSTQTVDQSA 640
            N WG FPS    W +S E+F    K  S   +LK+R S+G  GN  +        +    
Sbjct: 719  NRWGYFPSASLAWRVSGEDFFTKAKFLSFVDDLKIRTSYGVTGNFQIGNYDHLSLMALDN 778

Query: 641  GLVAIFGGLPYTGASIRSIVPPFLLWERSAGTDVGLEMGFLNNRLTVEADYYSRKTEQAI 700
             ++    G    G    +I    L WE++A  +VG+++      L +  DYY+  T   +
Sbjct: 779  YILGTGNGQLVQGYKPNTIKNDDLSWEKNAMVNVGVDLQMFKGLLGITVDYYNTNTSNML 838

Query: 701  FDIPVFGNLGTANSTLIANQADIQNRGFEFSATWADKTEGGFSYSVSGNVGINNNKVLNV 760
             ++PV  +L T  ST + N   + NRG+E + T        F YS + N   N N+V  +
Sbjct: 839  LNVPV-PHL-TGYSTALMNIGKVNNRGWEIALTSQKNFTKDFGYSFNANYATNTNEVKAL 896

Query: 761  TSGSNPIYRGGAGITSGYLSTRTVNNRPIGEFFGYQVEGVFQTDAEAAAWPGFKR---GD 817
              G+ PI   G+ +   Y  T+     PIG ++    +G+F  + E   +P F     GD
Sbjct: 897  GPGNAPIISTGS-VDHAYYITKV--GEPIGCYYLLVQDGIFSNEEELKKYPHFSNTQPGD 953

Query: 818  FKYADINGDGIIDL-RDRVVLGNPNPKFTYGVNTNFAYKNFDLTLDIQGVADVDVFNAN- 875
            F++ D++GDG++DL +DR ++GN  P FTYG      YK  DL  + QGV   ++ N N 
Sbjct: 954  FRFVDVDGDGVMDLDKDRTIVGNYMPDFTYGFGGKVWYKGIDLDFNFQGVYGNEILNLNR 1013

Query: 876  --LSNRFGNENYTKDFISNRWTSA---GTSNTYASASLASGLNNAPNSFYVEKGDYIRLR 930
              + N  GN N T     NRW SA   G      +   + G N   +++++E G Y+RL+
Sbjct: 1014 RYIDNLEGNTNGT-TIALNRWKSADNPGNGQVNRANRKSKGYNGRTSTWHLEDGSYLRLQ 1072

Query: 931  NIQLGYTLPQVISNKMKMQRLRLFVNAQNAVNIFGYKGFSPEVGGAPTNA---GIDTNVY 987
            N+ LGYTLPQ ++ +  +++LR++V+ QN      Y G++PEV   P+N+   G D   Y
Sbjct: 1073 NVTLGYTLPQNLTRRFFVEKLRVYVSGQNLWTSTNYGGYNPEVNARPSNSLSPGEDYGTY 1132

Query: 988  PLFATYNFGVNVT 1000
            PL  T+ FG+N+T
Sbjct: 1133 PLAKTFLFGLNIT 1145