Pairwise Alignments

Query, 186 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 83.2 bits (204), Expect = 2e-21
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 12/160 (7%)

Query: 22  AFNLLLKKYQQKIYWHIRRLVLNHDDCDDLLQEVFVKVWKNLDKFRSDSQLYTWIYRIAT 81
           AF  L   + +K+Y    RL       +++ QE F+ VW+ L +F+ +SQ  TW++ +  
Sbjct: 28  AFKQLYLNHHKKVYALSLRLCGQASQAEEITQECFILVWQKLPQFKGESQFSTWLHTLCV 87

Query: 82  NESITFLNKQKQ--RNNTPLDEVSSELADNLVASSYFNGDKLELKLQKAILTLPEKQRII 139
           N++++F+ KQK       P++            + + + D+    L K IL LPE+ RI+
Sbjct: 88  NQALSFIRKQKSFWARFIPMES----------DAEHPSSDENYQGLDKLILKLPERARIV 137

Query: 140 FNMKYFDDMKYEEISEVLGTSVGALKASFHIAAKKIEAFI 179
           F +   +  ++EEI+++LG +VG  K  +H A + ++  +
Sbjct: 138 FVLCAIEGYQHEEIAQLLGIAVGTSKTQYHRAKQLLQEML 177