Pairwise Alignments

Query, 342 a.a., pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  195 bits (496), Expect = 1e-54
 Identities = 120/315 (38%), Positives = 174/315 (55%), Gaps = 21/315 (6%)

Query: 18  HLKIIVDKGQSLLRIDKFLMVRVENASRNRIQNAIDAGNVLVNQKQIKASYKVKPYDEI- 76
           +LK  +   Q+ LR+D+ +     + SR R++  I  GNV V+   +      KP +++ 
Sbjct: 6   NLKSEISATQTGLRLDQAIAELFPDYSRTRLKEWILGGNVYVDGVVV-----TKPREKVL 60

Query: 77  --SIVLPHPPRDTEVYPE--DLPLDIIYEDSDLLVVNKAAGMVVHPGFNNYTGTLVNALA 132
              ++      + EV  E  ++ LDI+YED  +LV+NK AG+VVHPG  N  GTL+NAL 
Sbjct: 61  ESQVIEIEATLEEEVAAEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALL 120

Query: 133 FHFEQLPQLPGNDGRPGLVHRIDKDTSGLLLISKNEKSITHLARQFFDHSITRKYIALVW 192
            H  ++  +P    R G++HR+DKDT+GL++++K  ++ THL        ITR+Y A+V 
Sbjct: 121 HHCPEIEHVP----RAGIIHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVL 176

Query: 193 GDIENDGTVTGYIGRSAKDRRVMDIYDDEEKGKWSVTHYKVLKRLGYVTLISCELETGRT 252
           G +   GTV   IGR    R  M ++     G+ SVTHY+V ++    T +   LETGRT
Sbjct: 177 GTMTAGGTVDAPIGRHPTKRTHMAVH---HSGRPSVTHYRVAEKFRAHTRLRLRLETGRT 233

Query: 253 HQIRAHMQHIGHPLFNDAMYGGDKILKGTTFNKYKQFVDNCFELLPRQALHAQSLGFIHP 312
           HQIR HM HIGH L  D +YGG          ++ + + N      RQALHA  L   HP
Sbjct: 234 HQIRVHMAHIGHVLVGDPVYGGRPKPPKNASPEFFEVLKN----FTRQALHAVRLELAHP 289

Query: 313 STKEYMYFESPLPPD 327
            T E M F +P+P D
Sbjct: 290 VTMEIMSFNAPIPED 304