Pairwise Alignments

Query, 342 a.a., pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  196 bits (498), Expect = 7e-55
 Identities = 124/310 (40%), Positives = 170/310 (54%), Gaps = 23/310 (7%)

Query: 44  SRNRIQNAIDAGNVLVNQKQIK-ASYKVKPYDEISIVLPHPPRDTEVYPEDLPLDIIYED 102
           SR R+   I+AG + VN   +  A  KV     I I +     D+ + PED+PL++IYED
Sbjct: 33  SRTRLARLIEAGQLQVNGTVVSDAKAKVDEGALIEITIEEA-EDSHIGPEDIPLEVIYED 91

Query: 103 SDLLVVNKAAGMVVHPGFNNYTGTLVNALAFHFEQLPQLPGNDGRPGLVHRIDKDTSGLL 162
            DL+V+NK  GMVVHP     +GTLVNAL  H        G   RPG+VHRIDK+TSGLL
Sbjct: 92  DDLIVINKPTGMVVHPAPGTPSGTLVNALLHHCGDNLSGVGGVKRPGIVHRIDKETSGLL 151

Query: 163 LISKNEKSITHLARQFFDHSITRKYIALVWGDIE-NDGTVTGYIGRSAKDRRVMDI---- 217
           +++K++ +   LA QF  H++ R Y A+ +G  + ND  + G  G S +   ++ +    
Sbjct: 152 VVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVKGTSFEPGNILKLTTQL 211

Query: 218 ---YDDEEK-------GKWSVTHYKVLKRLG---YVTLISCELETGRTHQIRAHMQHIGH 264
                D ++       G+ ++T  +++   G    V LI C LETGRTHQIR HM H GH
Sbjct: 212 ARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLETGRTHQIRVHMAHGGH 271

Query: 265 PLFNDAMYGGDKILKGTTFNKYKQFVDNCFELLPRQALHAQSLGFIHPSTKEYMYFESPL 324
            L  D +YGG + L   +     +      +  PRQALHA  LGFIHP T + M FE+PL
Sbjct: 272 GLVGDPVYGGKRKLAAKSL---PEDTAAAIQAFPRQALHAAVLGFIHPVTGDAMRFEAPL 328

Query: 325 PPDFKAGLTK 334
           P D    L K
Sbjct: 329 PEDMAHLLQK 338