Pairwise Alignments

Query, 342 a.a., pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 558 a.a., pseudouridine synthase, RluA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  171 bits (432), Expect = 5e-47
 Identities = 108/291 (37%), Positives = 158/291 (54%), Gaps = 17/291 (5%)

Query: 44  SRNRIQNAIDAGNVLVNQKQIKA-SYKVKPYDEISIVLPHPPRDTEVYPEDLPLDIIYED 102
           SR +++ AI  G   V  +     + +V+P   +++ L  P    +V PED  L ++Y D
Sbjct: 49  SREKVKRAIRDGAATVQGRACTVPNTRVEPGQTVTLTLAVPA--AKVTPEDGDLAVLYRD 106

Query: 103 SDLLVVNKAAGMVVHPGFNNYTGTLVNALAFHFEQLPQLPGNDG-RPGLVHRIDKDTSGL 161
           + + V++K AG+ VHP  +   GTLV+ L  HF   P+L   +G RPG+VHRIDKDTSGL
Sbjct: 107 AAIAVLDKPAGLTVHPCPSCPEGTLVHRLVRHF---PELAAQEGFRPGIVHRIDKDTSGL 163

Query: 162 LLISKNEKSITHLARQFFDHSITRKYIALVWGDIENDGTVTGYIGRSAKDRRVMDIYDDE 221
           LL++  E     L+R F +  + ++Y+ALV G  +  G +   IGR    +  M +  + 
Sbjct: 164 LLVALTEAVRLELSRAFAERQVHKEYLALVHGVPKAQGELEAPIGRHPLHKVKMAVVPEN 223

Query: 222 EKGKWSVTHYKVL--KRLGYVTLISCELETGRTHQIRAHMQHIGHPLFNDAMYGGDKILK 279
             GK + + ++VL     G   L++  + TGRTHQIR HM H+GHPL+ DA+YG  + + 
Sbjct: 224 RGGKPARSAWRVLLADPDGRFALVAVRIFTGRTHQIRVHMAHLGHPLWQDAVYGPSEAVA 283

Query: 280 GTTFNKYKQFVDNCFELLPRQALHAQSLGFIHPSTKEYMYFESPLPPDFKA 330
                          +  PRQ LHA  L F HP T   M+F  P PPDF A
Sbjct: 284 PA--------AGELPDFPPRQMLHAWRLSFRHPETDRDMHFTCPPPPDFAA 326