Pairwise Alignments

Query, 342 a.a., pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 347 a.a., pseudouridine synthase, RluA family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  193 bits (491), Expect = 5e-54
 Identities = 122/307 (39%), Positives = 169/307 (55%), Gaps = 24/307 (7%)

Query: 44  SRNRIQNAIDAGNVLVNQKQIKASYKVKPYDEISIVLPHPPRDTEVYPEDLPLDIIYEDS 103
           SR+R+   I+AG+V    + + +        ++  +    P +  +  E +PLD+I+ED+
Sbjct: 38  SRSRLVKLIEAGDVRRGAEVLASPKARVAAGDVLTLRLGAPAEVPLVAEAIPLDVIFEDA 97

Query: 104 DLLVVNKAAGMVVHPGFNNYTGTLVNALAFHFEQLPQLPGNDGRPGLVHRIDKDTSGLLL 163
           DL+VVNK AGMVVHP   +  GTLVNAL  H        G + RPG+VHRIDKDTSGLL+
Sbjct: 98  DLIVVNKPAGMVVHPAPGSPAGTLVNALMHHCGDSLSGIGGEKRPGIVHRIDKDTSGLLV 157

Query: 164 ISKNEKSITHLARQFFDHSITRKYIALVWGDIE-NDGTVTGY----------------IG 206
           ++K++ +   LA QF  HS+ R Y ALV G  E +D  + G                 + 
Sbjct: 158 VAKSDHAHQGLAAQFAAHSVERIYDALVHGVPEASDPRLRGLPMVRFEPGGVLCLRASLA 217

Query: 207 RSAKDRRVMDIYDDEEKGKWSVTHYKVLKRLG---YVTLISCELETGRTHQIRAHMQHIG 263
           R   DR+   +   E +G+ +VT  +V  R G    V  ++C LETGRTHQIR H+ HIG
Sbjct: 218 RHRTDRQRQAVV-AEGQGRHAVTRARVEARFGDPAGVAHLACWLETGRTHQIRVHLAHIG 276

Query: 264 HPLFNDAMYGGDKILKGTTFNKYKQFVDNCFELLPRQALHAQSLGFIHPSTKEYMYFESP 323
           H L  D +YGG K L    F+         F   PRQALHA++LGF+HP T   + F +P
Sbjct: 277 HGLLGDPVYGGRKRLSAKAFSPQALAAAEAF---PRQALHARTLGFVHPVTGAALSFAAP 333

Query: 324 LPPDFKA 330
           +P D  A
Sbjct: 334 MPADMAA 340