Pairwise Alignments

Query, 342 a.a., pseudouridine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 323 a.a., ribosomal large subunit pseudouridine synthase D (RefSeq) from Shewanella sp. ANA-3

 Score =  186 bits (473), Expect = 5e-52
 Identities = 119/317 (37%), Positives = 174/317 (54%), Gaps = 25/317 (7%)

Query: 18  HLKIIVDKGQSLLRIDKFLMVRVENASRNRIQ-----NAIDAGNVLVNQKQIKASYKVKP 72
           +LK  +   Q+ LR+D+ L     + SR RI+     +A+    V+VN+ + K       
Sbjct: 6   NLKSEISATQTGLRLDQALAELFPDYSRTRIKEWILSDAVYVDGVIVNKPREKVF----- 60

Query: 73  YDEISIVLPHPPRDTEVYP--EDLPLDIIYEDSDLLVVNKAAGMVVHPGFNNYTGTLVNA 130
             E+  +  +   + EV+   + + LDI+YED D+LV+NK AG+VVHPG  N  GTL+NA
Sbjct: 61  --ELQRIEINATLEEEVHAAAQAIELDIVYEDDDILVINKQAGLVVHPGAGNADGTLMNA 118

Query: 131 LAFHFEQLPQLPGNDGRPGLVHRIDKDTSGLLLISKNEKSITHLARQFFDHSITRKYIAL 190
           L  H   +  +P    R G+VHR+DKDT+GL++++K  ++ THL        ITR+Y A+
Sbjct: 119 LLHHCPNIEHVP----RAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAI 174

Query: 191 VWGDIENDGTVTGYIGRSAKDRRVMDIYDDEEKGKWSVTHYKVLKRLGYVTLISCELETG 250
           V G +   GTV   IGR    R  M ++     GK +VTHY+V ++    T +   LE+G
Sbjct: 175 VLGTMTAGGTVDEPIGRHPTKRTHMAVH---HSGKPAVTHYRVAEKFRNHTRLRLRLESG 231

Query: 251 RTHQIRAHMQHIGHPLFNDAMYGGDKILKGTTFNKYKQFVDNCFELLPRQALHAQSLGFI 310
           RTHQIR HM +IGH L  D +YGG          ++ + + N      RQALHA  L   
Sbjct: 232 RTHQIRVHMAYIGHVLVGDPVYGGRPKPPKAASPEFFEILKN----FKRQALHAVRLELA 287

Query: 311 HPSTKEYMYFESPLPPD 327
           HP T E M + +P+P D
Sbjct: 288 HPVTCEIMSWTAPIPED 304