Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1139 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  297 bits (761), Expect = 3e-84
 Identities = 280/1097 (25%), Positives = 493/1097 (44%), Gaps = 156/1097 (14%)

Query: 37   VRGKVVDKGDGSGIPAVTIMASTATRAIGMTRDDGTFTV-SVPDNATLTFKYLNYKDVTI 95
            V G VVD  +G  I   +I+    +    +T  DG F +  VP+ A LT  Y+ YK V +
Sbjct: 127  VTGTVVD-ANGEPIIGASIVIKGESHGT-ITDFDGKFALPDVPEKAVLTISYIGYKTVNL 184

Query: 96   KLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVMGAVTSLRGKDIQDVPVSNVAELF 155
                +  +K+V+ ED   ++EV + VGYG ++++ V  +++ ++ ++I      N  ++ 
Sbjct: 185  ATTDQTLVKVVLEEDSKMIDEV-VVVGYGVQSQKLVTTSISKVKMENIDQGNDYNPIKML 243

Query: 156  QAKVPGLNIQNNTGSPGAAPSINMRGLSGISVTGSGDNAFLTPTSPLFVIDGVPVDLNTD 215
            Q +V G+NI + +G+PG  P+I +RG+   SV+G         +SPL+V+DG+P      
Sbjct: 244  QGRVAGVNISSASGTPGETPNITVRGIG--SVSGG--------SSPLYVVDGIP------ 287

Query: 216  YQYGFSSNGPGISPLSLIPAEDIDEILFLKDASATALYGAQGAYGVILINTRRGKSKTPI 275
                 S   P ++P       DI+ +  LKDASA A+YG++   GV+LI T+ G+     
Sbjct: 288  -----SEKYPNLNP------NDIESMEVLKDASAAAIYGSRANAGVVLITTKSGQQGKTK 336

Query: 276  IQYSTNFFFNTPPKLRQVIGGAAESNLRLWEIYTYGANIYSARQSVDNTPMLADSLNAFY 335
            I+ S  + F +     ++       N     I  Y   + +  Q    + +         
Sbjct: 337  IEVSGRYGFASLASDIEMANSTEYMNTMQAAIDNYNVQMGTNLQLYIPSQI--------- 387

Query: 336  NNSTDW-QSIFYRSTYNQQHNVNASGGDDSFNYKINLGYYDEKGIQENTGFTRYSLSMNT 394
               TDW + I  +++     +++ SGG++   +  +LG   ++G    + + +Y++    
Sbjct: 388  -QETDWVKEISRKNSKTGAGSISISGGNEKTTFFASLGANTQEGYLNKSKYDQYNMRAKF 446

Query: 395  RYKPSPKFNVNLILSSSLGNS----QKGSGNGILQTGVASGA--------GSSSLLPGPN 442
             +K +  F +N+ L+ S   S    +  +   +L+T              G+S  + G +
Sbjct: 447  SHKINSIFKLNMNLAGSASRSDLLEETSTSLKVLRTAREEQPWYSPYKEDGTSYKVNGTD 506

Query: 443  LINSNAALGALIVDNDNKAGNIKTSVEARYEFLTGLAVSNITSYDYSMGTTETFNPAILN 502
            ++  N  +  LI + D         V  +Y+ L+G+   ++T +     T       IL+
Sbjct: 507  ILRHNPLM--LINEED--------WVAKKYQ-LSGVFSIDVTPFKGFKYTPTVSAYGILD 555

Query: 503  NNVAGVYSYND--KRSTLYNRAMVSFNKSLQKDVHNIGAY-------VFSEVYVRNFQAH 553
            N    +   +D  K S+ +       ++S +  + N+ +Y       ++S +   +F+ +
Sbjct: 556  NVSKKLSDKHDARKNSSGWGALAQQKDQSFRYVIDNVFSYNNEWNKLIYSVMLGHSFEKY 615

Query: 554  AIQQDQYTNDQY-QGPFGSAS---ASSGGGVLD---NYSDSRAASLAASLSYNYQTKYLI 606
              +Q    +D Y  G + S+S    ++G  +     +Y+     S    ++ N+  KY++
Sbjct: 616  TYEQFGAKSDNYANGAYPSSSFDLINAGPNIYAGDISYTSYALESYFGRIALNWDNKYIL 675

Query: 607  EATFRLDGTSSTGLNAPWAKNPSLALKWNFNKENFLADSKWLDVGMLRLSWGR------- 659
             A+ R DG+S    N  +   PS +  W  + E F   +K+++   LRLSWG        
Sbjct: 676  NASLRSDGSSRFAKNKRYGYFPSASFAWRASNEGFFPKNKYVNDAKLRLSWGMTGSMAGV 735

Query: 660  -NIAPVGNVFDANGTYDYYGNYNGIPTTAVDFNNLPNIKLLP-TTTTQYNAGLDLNLFKN 717
             N AP+ ++  A G      +YNG    +  F    + + L     +Q+N G D+ +F++
Sbjct: 736  SNYAPL-SLISAGGA-----SYNG----SAGFQISQDARALTWEKASQFNIGFDIEMFQS 785

Query: 718  RITLNFDTYYKMVDNQLWEKNITTHNAFTKLKTNEVSNVNYGYELALSFRPLPASSKVNW 777
            R+TLN D +Y+   + L++K +     +T L++N  S  N G ELAL+ + L  + K  W
Sbjct: 786  RLTLNVDMFYQKTTDLLFKKPVNASTGYTTLQSNIGSLENKGLELALNGKIL--TGKFKW 843

Query: 778  SVSINGAYNKEKITALPDATRQLLLDGGAT----GQAILYRLGRNSLTNILYNFKGVFST 833
             +  N ++ K K+ +L + +   ++    +    G       G    T  +   +G++  
Sbjct: 844  DLGGNISFVKNKLLSLIEGSEMYVVPSSGSNLLGGSMHALINGEPISTFYMLKMEGIYQR 903

Query: 834  DDDVPVN-PANGTRYHTFNGSTPVYFKAGDPYYADINGDYVLDAKDMVGAGNSQPLINGG 892
            DD+VP    A G R             AGD  Y D N D  +   D V  G + P   GG
Sbjct: 904  DDEVPAKLYAKGVR-------------AGDVRYFDYNEDGDITDADRVNVGKAIPDFYGG 950

Query: 893  ISSYASYKGFSLNVIMAYTWHRDIL-----------NNPLAASFQNF------SSPFSAN 935
            I+S  SYKGF L++   ++    ++            + L  +  N        S     
Sbjct: 951  ITSNFSYKGFDLSLFGQFSVGGKVMAAWRGVNGSEGTDHLGLALSNVKVGDRGESVEQFF 1010

Query: 936  NLVPITEYNIWRQSGDIANYPNPYDYLRYGSYSATDKSTQFLPFRYN---QTLFQEDGSY 992
            N+        WR  G   + P P   +R G ++  D       + YN    T + ED SY
Sbjct: 1011 NISKEVANGYWRGEGTSNSIPRP---VRIGVHTGYD-------YDYNVQTSTRYLEDASY 1060

Query: 993  LKLATVTVGYTFKPELTKRLGITSLRVYGTANNIHTFSFYSGADPENVSSLGRDNS---- 1048
             KL TVT+GYT    +TK++ + SLR Y +A+N+  F+ YSG DPE   S    +S    
Sbjct: 1061 FKLKTVTLGYTLPESITKKIHVNSLRFYVSADNLLAFTKYSGYDPETSFSGSPGDSNYGV 1120

Query: 1049 --GGYPVRRTYALGLNI 1063
              G  PV RT+  GLN+
Sbjct: 1121 DFGLQPVLRTFIFGLNL 1137