Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  320 bits (820), Expect = 3e-91
 Identities = 292/1118 (26%), Positives = 472/1118 (42%), Gaps = 130/1118 (11%)

Query: 4    YYTDMAKKYILNLLLLMTLTVLGSSAWAQNLISVRGKVVDKGDGSGIPAVTIMASTATRA 63
            YYT++ K      L  +   ++  S  AQN  +V+G +VD+ D   I A   +  TAT +
Sbjct: 2    YYTNIIKSISARGLFTLLALIMSISLHAQNA-TVKGVIVDETDTPLIGATVQVKGTATGS 60

Query: 64   IGMTRDDGTFTVSVPDNATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGY 123
            I  T  DG +T+     A +TF Y+ YK   IK  G++ L + M+ D  TL+EV + VGY
Sbjct: 61   I--TDFDGNYTIKANKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEV-VVVGY 117

Query: 124  GQKTKETVMGAVTSLRGKDIQDVPVSNVAELFQAKVPGLNIQNNTGSPGAAPSINMRGLS 183
            G   +  + G+V S+  KD++    S+VA     ++ G+ I +  G+PGA  SIN+RG+ 
Sbjct: 118  GTMKRSDLTGSVASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVG 177

Query: 184  GISVTGSGDNAFLTPTSPLFVIDGVPVDLNTDYQYGFSSNGPGISPLSLIPAEDIDEILF 243
                T +GD+      SPL+++DG  VD + DY                +   DI+ I  
Sbjct: 178  ----TLTGDS------SPLYIVDGFEVD-DIDY----------------LSNSDIESIEV 210

Query: 244  LKDASATALYGAQGAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVIGGAAESNLR 303
            LKDAS++A+YGA+ A GV+LI T+ GK+  P I Y+ +  +    K   V+       L+
Sbjct: 211  LKDASSSAIYGARAANGVVLITTKSGKTGRPTITYNGSASYRKISKKLDVLSPYEFVKLQ 270

Query: 304  LWEIYTYGANIYSARQSVDNTPMLADSLNAFYN-NSTDWQSIFYRSTYNQQHNVNASGGD 362
                  Y  + +      ++ P    SL+ +      +WQ   +  T++Q H+++  GG 
Sbjct: 271  GEVNSKYSDSYFKPGNDDNDIPYRYQSLDDYMGVKGVNWQDETFNPTWSQDHSLSIMGGT 330

Query: 363  DSFNYKINLGYYDEKGIQENTGFTRYSLSMNTRYKPSPKFNVNLILSSSLGNSQKGSG-- 420
            D   Y  +   Y E GI +N+GF + +       K S   + N+ ++ +L N +KG G  
Sbjct: 331  DDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLSKSLSFNITVNYALTN-RKGVGTS 389

Query: 421  ------NGILQTGVASGAGSSSLLPG--------PNLINSNAALGAL-------IVDNDN 459
                  N + Q   A   G   L           P ++ S  +L  +        V N  
Sbjct: 390  ADSGRFNMLAQILSARPTGGLKLTDDELLDSAIDPEMLESGESLAQVNPVKQTESVTNTK 449

Query: 460  KAGNIKTSVEARYEFLTGLAVSNITSYDYSMGTTETF-----NPAILNNN--VAGVYSYN 512
            +A     +    ++ + GL      +Y+ +   T  F       A  N            
Sbjct: 450  RAEMWSGNGSISWQIIKGLTFKTAGTYNTTNNRTNIFYKDGSKEAYRNGQKPYGRTQMGR 509

Query: 513  DKRSTLYNRAMVSFNKSLQKDVHNIGAYVFSEVYVRNFQAHAIQQDQYTNDQYQGPFGSA 572
            D R T +N   +++ + ++K  HN    +  EV  R+ +    +   +  D     +   
Sbjct: 510  DVRWTNFNN--LTWKQKVKK--HNYDVMLGHEVSFRSTEYLLGEAMDFPFDNLGNDYLGL 565

Query: 573  SASSGGGVLDNYSDSRAASLAASLSYNYQTKYLIEATFRLDGTSSTGLNAPWAKNPSLAL 632
             A+    V  +YS+    S  A  +YNY  +YL+ AT R DG++       W   PS + 
Sbjct: 566  GATPSK-VESSYSEKMLLSFFARGNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSA 624

Query: 633  KWNFNKENFLADSKWLDVGMLRLSWGRNIAPVGNVFDANGTY--------DYYGNYNGIP 684
             W  ++E F+ D  W+    +RL WG     VGN  D    Y          YG  N   
Sbjct: 625  AWRVSEEAFMKDVDWVSNFKVRLGWG----IVGN--DRISNYLSMDLYEASKYGVGNN-T 677

Query: 685  TTAVDFNNLPNIKLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVDNQLWEKNITTHNA 744
             T +    L N  L    ++  N G+DL    NR+ +  D + K   + L  +++     
Sbjct: 678  VTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFFVKNTKDLLLAQSLAHVTG 737

Query: 745  FTKLKTNEVSNVNYGYELALSFRPLPASSKVNWSVSINGAYNKEKITALPDATRQLL--- 801
            F     N     N G EL+L+   +  +   +W  + N ++ K  +  L      +    
Sbjct: 738  FDSQMQNIGKIQNKGIELSLNSTNI-QTRDFSWQTNFNISFIKNTLKGLASGVESMYARS 796

Query: 802  -LDGGATGQAILYRLGRNSLTNILYNFKGVFSTDD--DVPVNP-------ANGTRYHTFN 851
              D   T    +  +G++      Y F GV+ + D    P N         N  RY T  
Sbjct: 797  GFDSNFTAYDYIATVGQSLGLIYGYEFDGVYQSSDFYTTPDNQLILKEGVTNNARYGT-- 854

Query: 852  GSTPVYFKAGDPYYADINGDYVLDAKDMVGAGNSQPLINGGISSYASYKGFSLNVIMAYT 911
                   K G   Y D +GD ++   D    GN+ P   GGI++   YKG   + ++ + 
Sbjct: 855  ------VKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGITNTFDYKGIDFSFMLQFN 908

Query: 912  WHRDILNNPLAASFQNFSSPFSANNLVPITEYNIWRQSGDIANYPNPYDYLRYGSYSATD 971
            +  DI N     S Q+ +     N L  + +   W  +      P+   Y+    YS   
Sbjct: 909  YGNDIYNATRLYSTQSRNG--RRNMLAEVADR--WSPTNTSNLVPSQDGYIVNDVYSR-- 962

Query: 972  KSTQFLPFRYNQTLFQEDGSYLKLATVTVGYTFKPELTKRLGITSLRVYGTANNIHTFSF 1031
                          F EDGS+L+L  VT+GYT   + T++  ++ LR+Y T  N+   S 
Sbjct: 963  --------------FIEDGSFLRLKNVTLGYTLPHKWTRKFHVSRLRLYATGQNLFCVSG 1008

Query: 1032 YSGADPENVSSLGRDNS-----GGYPVRRTYALGLNIQ 1064
            YSG DPE  S+     +     G YP  R +  G+++Q
Sbjct: 1009 YSGYDPEVNSASNTPMTPGLDWGAYPKSRVFTFGIDLQ 1046