Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1088 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  282 bits (721), Expect = 1e-79
 Identities = 277/1075 (25%), Positives = 439/1075 (40%), Gaps = 127/1075 (11%)

Query: 65   GMTRDDGTFTVSVPD---NATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITV 121
            G+T  +G + V VP+   + T+ + Y+  K   IK  G+  L + +  +   ++EV ++ 
Sbjct: 63   GITNLNGQYNVKVPEGEKDLTIVYSYIGMKTKRIKYTGQTLLNVTLESESMAVDEVVVSA 122

Query: 122  ------GYGQKTKETVMGAVTSLRGKDIQDVPVSNVAELFQAKVPGLNIQNNTGSPGAAP 175
                    G   KE V         K I   PV ++ E  Q ++ G++I    G PG+  
Sbjct: 123  RRLNRNDLGISDKEMVSATQKVDMEKLIAAAPVVSIEEALQGQLGGVDIVLG-GDPGSRS 181

Query: 176  SINMRGLSGISVTGSGDNAFLTPTSPLFVIDGVPVDLNTDYQYGFSS-NGPGISPLSLIP 234
            +I +RG S ++ +          + PL VIDGVP        + FS+     +  L  I 
Sbjct: 182  AIRIRGTSTLNAS----------SDPLIVIDGVPYPTEISDDFNFSTATEEDLGALLNIS 231

Query: 235  AEDIDEILFLKDASATALYGAQGAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVI 294
              DI  +  LKDASATA++G QGA GV++I T++G        +S+ +     P    ++
Sbjct: 232  PNDIASVEVLKDASATAIWGTQGANGVLVIKTKQGTVGKTRFSFSSKWTMKEDPSTIPML 291

Query: 295  GGAAESNLR---LWEIYTY-GANIYSAR--QSVDNTPMLADSLN----AFYNNSTDWQSI 344
             G   ++L    +W    Y G N    +    + + P + D+ +      YN +T+W   
Sbjct: 292  NGKEYTSLMQESIWNSAKYIGLNNPGNKYLNMLSDAPAIGDNPDWRYYDEYNQNTNWLDY 351

Query: 345  FYRSTYNQQHNVNASGGDDSFNYKINLGYYDEKGIQENTGFTRYSLSMNTRYKPSPKFNV 404
              +      ++ + +GG +   Y+ +LGY  + G    T   R + SM   Y+ S K   
Sbjct: 352  VRQKALVSDNSFSMNGGGEKATYRFSLGYMSDIGTTIGTSMNRLNTSMVINYQFSNKLKF 411

Query: 405  NLILSSSLGNSQKGSGNGILQTGVASGAGSSSL----LPG-----------PNL------ 443
                S S  N+     N I    ++     S      L G           PN       
Sbjct: 412  GADFSYSQTNTDANWTNTIRSEALSKMPNKSPFTVNDLTGALTDEYFTYHDPNFEGSFNG 471

Query: 444  -INSNAALGALIVDNDNKAGNIKTSVEARYEFLTGLAVSNITSYDYSMGTTETFNPAILN 502
              N N    A    N       K +  A YE L G       S +     T  F P ++ 
Sbjct: 472  KSNYNPVAMAHEAINRTVQREGKITFRADYEILPGFYYKGWASINMRAIKTRRFLPQVVT 531

Query: 503  NNVAGVYSYNDKRSTLYNR--AMVSFNKSLQ----KDVHNIGAYVFSEVYVRNFQAHAIQ 556
              V  V  Y ++ +  Y+   A+ + NK +      D HNI A V             ++
Sbjct: 532  G-VEQVNKYANQSADAYSDQLALQTENKLMYIKNWNDKHNIIANVL------------VR 578

Query: 557  QDQYTNDQYQGP-FGSASASSGGGVL--------DNYSDSRAASLAASLSYNYQTKYLIE 607
              QY N  Y    +G+AS+     V+         + S++R  S    L+Y    +Y++ 
Sbjct: 579  TGQYINSGYNSEVYGNASSDLSDPVVGTTISDMNSSESETRNVSFVGVLNYTLLNRYVVH 638

Query: 608  ATFRLDGTSSTGLNAPWAKNPSLALKWNFNKENFL--ADSKWLDVGMLRLSWGRNIAPVG 665
             +   +G S+ G N      P++ L WNF  E  L  A  KWLD    R S G++     
Sbjct: 639  GSLNAEGNSAMGRNERMGYFPAVGLAWNFQNEPLLEKARDKWLDEAKFRFSIGQSGRAPS 698

Query: 666  NVFDANGTYDYYGNYNGIPTTAVDFNNLPNIKLLPTTTTQYNAGLDLNLFKNRITLNFDT 725
                  G Y    +Y  +  T      L N+K    T+T+YN GLD ++ K R+   FD 
Sbjct: 699  GASVYLGAYVKGTDYMNMSATKQARMQLDNLKW--ETSTEYNYGLDASVLKGRLRFTFDY 756

Query: 726  YYKMVDNQLWEK----NITTHNAFTKLKTNEVSNVNYGYELALSFRPLPASSKVNWSVS- 780
            YYK V + L +     + T+  + +   + ++ N  + +   +           +W ++ 
Sbjct: 757  YYKTVKDLLQKNYKLPSTTSFGSISYFNSGKMENKGWEFRTDVVI-----FENKDWRING 811

Query: 781  -INGAYNKEKITALPDATRQLLLDGGATGQAILYRLGRNSLTNILYNFKGVFSTDDDVPV 839
             +N + N+ KIT LP    Q          A    +GR   +   Y +KGV+   D    
Sbjct: 812  YVNFSRNENKITELPANMVQENYSPKNGAYAARAEVGRPIGSFYGYRYKGVYQNTDATYA 871

Query: 840  NPANGTRYHTFNGSTPVYFK-------AGDPYYADINGDYVLDAKDMVGAGNSQPLINGG 892
              A G   +   G  P+  K        GD  Y DIN D V++  D+V  GN+ P + GG
Sbjct: 872  RDAEGNVMNDAKGR-PIVMKNLTATCQPGDAMYEDINHDGVINQYDIVYLGNANPTLTGG 930

Query: 893  ISSYASYKGFSLNVIMAYTWHRDILNNPLAASFQNFSSPFSANNLVPITEYNIWRQSGDI 952
                  YK FS+N      + + ++N    A   N S   +AN    +     W+  GDI
Sbjct: 931  AGLTVKYKQFSINTFFHGRFGQSVVNT---ARMNNESMHGNANQSTAVLRR--WKNEGDI 985

Query: 953  ANYPNPYDYLRYGSYSATDKSTQFLPFRYNQTLFQEDGSYLKLATVTVGYTFKPELTKRL 1012
             + P    Y    +Y  +D+             F ED S+L+L  +T+ Y F   +  +L
Sbjct: 986  TDIPRAL-YGEGFNYLGSDR-------------FVEDTSFLRLKQLTLNYAFPKSICNKL 1031

Query: 1013 GITSLRVYGTANNIHTFSFYSGADPE-NVSSLGRD---NSGGYPVRRTYALGLNI 1063
            GITSL  + T  N+ T+S Y+G DPE N+ S   D   +    PV R Y  G N+
Sbjct: 1032 GITSLTCFVTGYNLFTWSSYTGQDPEVNLPSRPTDLATDGATTPVSRRYTFGFNL 1086