Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1071 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  287 bits (734), Expect = 3e-81
 Identities = 292/1124 (25%), Positives = 485/1124 (43%), Gaps = 136/1124 (12%)

Query: 14   LNLLLLMTLTVLGSSAWAQNLISVRGKVVDKGDGSGIPAVTIMASTATRAIGMTRDDGTF 73
            +  LLLM    L  S  AQ  I++ G V D   G  I   +I+    T    +T  DG F
Sbjct: 8    MRTLLLMIFAALSLSVSAQT-ITLNGNVKDT-TGEPIIGASIVEKGNTTNGTITDLDGNF 65

Query: 74   TVSVPDNATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVMG 133
            ++ VP NAT+   Y+  K   I + GK+ + + + +D   L+EV + +GYG   ++ + G
Sbjct: 66   SLKVPANATVVISYIGMKTQEIAIKGKSKIDVTLSDDAKALDEV-VVIGYGTAKRKDITG 124

Query: 134  AVTSLRGKDIQDVPVSNVAELFQAKVPGLNIQNNTGSPGAAPSINMRGLSGISVTGSGDN 193
            +V ++  + +  VPV++  E    K+ G+ I    GSP A   I +RG  G S+TG  DN
Sbjct: 125  SVATVNAEALTVVPVASATEALTGKMAGVQITTTEGSPDAEMKIRVRG--GGSITG--DN 180

Query: 194  AFLTPTSPLFVIDGVPVDLNTDYQYGFSSNGPGISPLSLIPAEDIDEILFLKDASATALY 253
                  +PLF++DG PV+  +D                 IPA DI+++  LKDAS+TA+Y
Sbjct: 181  ------TPLFIVDGFPVESISD-----------------IPASDIEDMTVLKDASSTAIY 217

Query: 254  GAQGAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVIGGAAESNLRLW--EIYTYG 311
            G++GA GVIL+ T+ GK     + Y+  + +    K+ + +   +  +   W  E+    
Sbjct: 218  GSRGANGVILVTTKSGKEGKISVNYNAYYSWK---KMAKQLNTLSSGDYAKWQYELAMLN 274

Query: 312  ANIYSARQSVDNTPMLAD--SLNAFYN-NSTDWQ-SIFYRSTYNQQHNVNASGGDDSFNY 367
            +  +      D T +  +   ++ + N    +WQ  +F R+ +   HN++ +GG D   +
Sbjct: 275  SGKHDTINPDDYTKVFGNYQDIDLYENIEGNNWQDQVFGRTGHTFNHNLSINGGSDKTKF 334

Query: 368  KINLGYYDEKGIQENTGFTRYSLSMNTRYKPSPKFNVNLILSSSLGNSQKGSGNGILQTG 427
              +  + D+K I +++ F R +LS+   +KP+ +  ++  +  S   +  G+G    ++ 
Sbjct: 335  AFSYAHMDDKAIMQDSDFKRDNLSLKVNHKPNKRVALDFSVRYS-NTTINGAGANESKSE 393

Query: 428  VASGAGS------------SSLLPG--PNLINSNAALGALIVDND--------NKAGNIK 465
            V+S                  L  G  P+L  +N  +   + DN         N  G+  
Sbjct: 394  VSSADSRMKDVMIYTPFNFKDLSDGYDPDLQLTNPLVS--VADNARQQSRQTFNYNGSFT 451

Query: 466  TSVEARYEFLTGLAVSNITSYDYSMGTTETFNPAILNNNVAGVYSYNDKRSTLYNRAMVS 525
                   +F T   + +  + D       T+N  I  NN       + +R T  N   ++
Sbjct: 452  WEFIDNLKFKTEFGLDHYYNKDKRFYGVTTYNSRINGNNQPIAVFTSKERKTFRNTNTLN 511

Query: 526  --FNKSLQKDVHNIGAYVFSE-VYVRN--------FQAHAIQQDQYTNDQYQGPFGSASA 574
              F K L+   H++   V  E + V++        F       DQ  N   QG   S   
Sbjct: 512  YDFKKILKNKDHSLSLLVGQELIKVKSNTDTDEVRFYPKLFTADQAFNLSSQGTAFSTDK 571

Query: 575  SSGGGVLDNYSDSRAASLAASLSYNYQTKYLIEATFRLDGTSSTGLNAPWAKNPSLALKW 634
                      +D    S  A  +Y++Q KYL  ATFR DG+S    +  W   PS AL W
Sbjct: 572  FYN-------ADDILLSYFARANYDFQGKYLASATFRADGSSKFSKDNRWGFFPSAALAW 624

Query: 635  NFNKENFLADSK-WLDVGMLRLSW---GRNIAP---VGNVFDA--NGTYDYYGNYNGIPT 685
              + ENF+  +K WLD   LR+S+   G N  P      ++ A    +  +  N +   T
Sbjct: 625  RMSSENFMESTKSWLDDLKLRISYGTAGNNNIPSDQTSTIWSAGSGASIGWMNNMSSYWT 684

Query: 686  TAVDFNNLPNIKLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVDNQLWEKNITTHNAF 745
            T     N P++K    TT   NAGLD  L   +++   + Y+    + L    + +   +
Sbjct: 685  TGAQMAN-PDLKW--ETTHTRNAGLDFTLLNGKLSGTVEYYWNTTKDLLINFPV-SGVGY 740

Query: 746  TKLKTNEVSNVNYGYELALSFRPLPASSKVNWSVSING--AYNKEKITALPDATRQLLLD 803
            +    N     N G+E+ L++    A +K N+++S N    +NK K+ +L  +      D
Sbjct: 741  SFQYRNLGETENKGWEVTLNWN---AINKKNYALSFNANVGFNKNKVKSL-GSLMDYSAD 796

Query: 804  GGATGQAIL--YRLGRNSLTNILYNF--KGVFSTDDDVPVNPANGTRYHTFNGSTPV--- 856
             G     I   +++        +Y F   G +   D                 ++ +   
Sbjct: 797  SGWASTDIQSDFKVQPGHSVGEIYGFVSDGRYEVSDFEGFIDGKWVLKAGVADASDIIGE 856

Query: 857  -YFKAGDPYYADING--DYVLDAKDMVGAGNSQPLINGGISSYASYKGFSLNVIMAYTWH 913
             Y + G     +++G  D  +   D    G++ P  +GG S  A   GF L     Y+  
Sbjct: 857  KYLRPGAMKLKNVDGSEDNKVTKDDQKVIGDTNPFCSGGFSVNARVYGFDLTANFTYSIG 916

Query: 914  RDILN-NPLAASFQNFSSPFSANNLVPI-TEYNIW---RQSGDIANYPNPYDYLRYGSYS 968
             DI N N +       SS +   N++ +  E   W      G I N P           +
Sbjct: 917  NDIYNANKIE---YTSSSKYKYRNMIDVMAEEKRWTNLNADGTICNDPTQL-------AA 966

Query: 969  ATDKSTQFLPFRYNQTLFQ---EDGSYLKLATVTVGYTFKPELTKRLGITSLRVYGTANN 1025
                ++ + P+     L     EDGS+L+LAT+++GYT    LT+++GI +LR Y T  N
Sbjct: 967  MNANTSMWSPWTQKYVLTDWAVEDGSFLRLATLSIGYTLPQTLTRKVGIQNLRFYATGYN 1026

Query: 1026 IHTFSFYSGADPE------NVSSLGRDNSGGYPVRRTYALGLNI 1063
            +   + YSG DPE      +  + G D S  YP  R Y +GLN+
Sbjct: 1027 LFCITNYSGFDPEVSTRTKSALTPGVDYS-AYPRSRQYVIGLNL 1069