Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1051 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  293 bits (750), Expect = 5e-83
 Identities = 291/1131 (25%), Positives = 502/1131 (44%), Gaps = 180/1131 (15%)

Query: 17   LLLMTLTVL---GSSAWAQNLISVRGKVVDKGDGSGIPAVTIMASTATRAIGMTRD-DGT 72
            ++L +L++L    ++ +AQN+  VRG V D   G  +P V+++    T   G T D DG 
Sbjct: 17   IILFSLSMLFAYATNGYAQNM--VRGVVTDV-TGDPLPGVSVVVKGTTT--GTTTDIDGR 71

Query: 73   FTVSVPDNATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVM 132
            ++++  + ATL F Y+      IK+NG++ + I++ ED+  L+EV + VGYG + K  + 
Sbjct: 72   YSINASNTATLEFSYIGMNKQEIKVNGRSTINIILKEDVANLDEV-VVVGYGTQKKAHLT 130

Query: 133  GAVTSLRGKDIQDVPVSNVAELFQAKVPGLNIQNNTGSPGAAP-SINMRGLSGISVTGSG 191
            G+V ++  KD+     SN+++    K+PGL  Q + G PG+   SI +RG S  S  GSG
Sbjct: 131  GSVATVSQKDMLKTTASNMSQTLVGKLPGLITQQSLGQPGSDDVSILIRGYSSFS--GSG 188

Query: 192  DNAFLTPTSPLFVIDGVPVDLNTDYQYGFSSNGPGISPLSLIPAEDIDEILFLKDASATA 251
                    + L ++DGV                     +  +   D++ +  LKDA++ A
Sbjct: 189  --------TVLVLVDGVE------------------RAMGQVDPNDVESVTILKDAASCA 222

Query: 252  LYGAQGAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVIGGAAESNLRLWEIYTYG 311
            +YG + A GV+L+ T+ G+     I Y  +   +    L +++ G      +  + Y   
Sbjct: 223  VYGMKAANGVVLVTTKHGQEGKTDITYRGSMTLSHATTLPKMMNGT-----QYMQWYNLA 277

Query: 312  ANIYSARQSVDNTPMLADSLNAFYNN-------STDWQSIFYRSTYNQQHNVNASGGDDS 364
              + +    VDN     + + A YN        +TDW S  Y++T   QHN++ +GG + 
Sbjct: 278  RKLDN--NGVDNPYFTDEEIAATYNGDPTDGFENTDWTSDLYKTTLMHQHNLSINGGSNK 335

Query: 365  FNYKINLGYYDEKGIQENTGFTRYSLSMNTRYKPSPKFNVNLILSS-----------SLG 413
              Y I+ GY  + GI +     R +   N   + +    V+L  ++           S G
Sbjct: 336  VRYFISGGYLHQDGIIKGNKNERSNFRSNIDVQATKDIKVSLNTAALIKDYYQPGGYSYG 395

Query: 414  NSQKGSGNGIL--------------QTGVASGAGSSSLLPGPNLINSNAALGALIVDNDN 459
            N Q  S    L               T    GA S++     N I  +A  G      ++
Sbjct: 396  NQQAYSIFHQLLYSIPFVPKEYEGYPTSAYRGATSAA-----NPIYGSANSGF----QES 446

Query: 460  KAGNIKTSVEARYE--FLTGLAVSNITSYDYSMGTTETFNPAILNNNV------------ 505
            +   I++S    Y   FL GL  +   S+D+    ++TF  A   N              
Sbjct: 447  RRVRIESSANVEYTAPFLKGLKANMFISWDWQDLASKTFAYAYSVNAYDSSTKSYSYVQS 506

Query: 506  ------AGVYSYNDKRSTLYNRAMVSFNKSLQKDVHNIGA-YVFSEVYVRNFQAHAIQQD 558
                    +Y  + K   +  R  +S+N      +H++GA +++ +  V++   +A + D
Sbjct: 507  ANLLADGNLYQGDQKSQQVILRPTISYNNKF--GLHDVGALFLYEQTQVKSSALNASRTD 564

Query: 559  QYTNDQYQGPFGSASASSGGGVLDNYSDSRAASLAASLSYNYQTKYLIEATFRLDGTSST 618
                D  +   G A  ++  G   +   S  A+    L+Y Y  KYL EA+FR DG+   
Sbjct: 565  YDLFDLPEISLGDAQTATNSG---SSGKSAYAAYVGRLNYAYANKYLAEASFRYDGSYKF 621

Query: 619  GLNAPWAKNPSLALKWNFNKENFLADS-KWLDVGMLRLSWGRNIAPVGNVFDANGTYDYY 677
                 W   PS++L W  ++E+F  D+   +D   LR S+G   +   + F    +Y Y 
Sbjct: 622  AKGHRWGFFPSVSLGWVMSEEDFFKDALPKIDYFKLRGSFGILGSDNVSAFLYRKSYSYT 681

Query: 678  GN---YNGIPTTAVDFNNL---PNIKLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVD 731
             N   +   P T    +N    PN +L    T  YN G DL+ +   + + FD +YK   
Sbjct: 682  NNGVVFGSTPNTQGTLSNTVAYPNERLTWEKTKSYNLGFDLSAWNGLLGVEFDVFYKYTY 741

Query: 732  NQLWE-KNITTHNAFTKLKTNEVSNV--NYGYELALSFRPLPASSKVNWSVSINGAYNKE 788
            + L    NI   +      ++E +    N G+E+AL  R      + ++S++ N +Y   
Sbjct: 742  DILQSVSNIYPPSLGGHYPSSENTGTFDNRGFEIALKHRN--RIGEFSYSLNGNLSYAHN 799

Query: 789  KITALPDATRQLLLDGGATGQAILYRLGRNSLTNILYNFK--GVFSTDDDVPVNPANGTR 846
            +I +   A      D     Q++L      S    L+  K  G++ +++++  +P     
Sbjct: 800  RILSRTQA------DNTLPWQSVL-----GSSVGELWGLKALGLYQSEEEIANSPQ---- 844

Query: 847  YHTFNGSTPVYFKAGDPYYADINGDYVLDAKDMVGAGNS-QPLINGGISSYASYKGFSLN 905
                + +TP   + GD  YADINGD  +D+ D +      +P +   + + A+YKGF L+
Sbjct: 845  ---VSWNTP---RVGDIKYADINGDGKIDSNDRIKISRGIRPEMMFALMADANYKGFDLS 898

Query: 906  V----------IMAYTWHRDILNNPLAASFQNFSSPFSAN--NLVPITEYNIWRQSGDIA 953
            V          ++ Y+W    LN   A      + P+ AN  N       N WR     A
Sbjct: 899  VQFQGAALCDKMLQYSWQD--LNG--ATDMTPMTRPWYANWDNAPLYLVENSWRPDHTNA 954

Query: 954  NYPNPYDYLRYGSYSATDKSTQFLPFRYNQTLFQEDGSYLKLATVTVGYTFKPELTKRLG 1013
             YP     L   S S ++ + Q          ++ +G+YL+L  VT+GYT     T ++G
Sbjct: 955  EYPR----LTVSSVSHSNNAQQ-------SDFWKRNGAYLRLKNVTLGYTLPKAWTNKMG 1003

Query: 1014 ITSLRVYGTANNIHTFSFYSGADPENVSSLGRDNSGGYPVRRTYALGLNIQ 1064
            ++++RVY    N+ TF+ +   DPE+ +      +G YP +RT++ G++++
Sbjct: 1004 LSNIRVYANGTNLLTFTDFKYIDPESTNVA----TGYYPQQRTFSFGIDVR 1050