Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1001 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  313 bits (803), Expect = 3e-89
 Identities = 286/1099 (26%), Positives = 452/1099 (41%), Gaps = 164/1099 (14%)

Query: 17   LLLMTLTVLGSSAWAQNLISVRGKVVDKGDGSGIPAVTIMASTATRAIGMTRDDGTFTVS 76
            +L   L V  S + +    +  G+V+D      +  V++     T    +T  DG FT++
Sbjct: 15   ILFAILAVFFSLSASAQQFTASGQVLD-AQKEPLIGVSVQEKGTTNG-AITDLDGNFTLT 72

Query: 77   VPDNATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVMGAVT 136
            V  NATL F Y+ YK    K +    +K+ + ED   LEEV + +GYG   ++ V  A++
Sbjct: 73   VQSNATLIFSYVGYKSQEQKAS--RQMKVTLQEDNEVLEEV-VVIGYGSVKRKDVTTAIS 129

Query: 137  SLRGKDIQDVPVSNVAELFQAKVPGLNIQNNTGSPGAAPSINMRGLSGISVTGSGDNAFL 196
            ++  KD+   P+ +  +  Q K  G+++   +G+PG   SI +RG +  S+ GS D    
Sbjct: 130  TVSTKDLDVRPIVSAGQAIQGKAAGISVIQPSGTPGGEMSIRVRGTT--SMNGSND---- 183

Query: 197  TPTSPLFVIDGVPVDLNTDYQYGFSSNGPGISPLSLIPAEDIDEILFLKDASATALYGAQ 256
                PL+V+DGVPVD                  +  +   DI+ +  LKDAS+ ++YG++
Sbjct: 184  ----PLYVVDGVPVD-----------------NIKFLSPNDIESMQILKDASSASIYGSR 222

Query: 257  GAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVIGGAAESNLRLWEIYTYGANIYS 316
             A GVILI T+ G +    +  +  F  N                    ++ +  A  Y 
Sbjct: 223  AANGVILITTKAGATGKAKVSLTAQFGLNKVAD----------------KVESLNAAQYK 266

Query: 317  ARQSVDNTPMLADSLNAFYNNSTDWQSIFYRSTYNQQHNVNASGGDDSFNYKINLGYYDE 376
              Q       L D L     + TDW    Y++   Q + V  S G++   Y ++ GY DE
Sbjct: 267  ELQDEIGLVSLPDGLP----DRTDWFDETYKTGKMQNYQVAVSNGNEKMKYYLSAGYLDE 322

Query: 377  KGIQENTGFTRYSLSMNTRYKPSPKFNVNLILSSSLGNSQKGSGNGILQTGVASGAGSSS 436
            KGI + + + RY+  +N   +      V+  +S S       +G G + TG   G    +
Sbjct: 323  KGILDISYYKRYNFRVNLENQIRSWLTVSANISYS---DYTSNGGGAMGTGANRGGVVLA 379

Query: 437  LLPGP------NLINSNAALG---------------ALIVDNDNKAGNIKTSVEARYEFL 475
            ++  P      + +N N                   A   +N +K   +  S       L
Sbjct: 380  VINTPTYAPIWDALNPNQYYNNFYGVGNITNPLENMARAKNNKDKENRLLASGNVLLTLL 439

Query: 476  TGLAVSNITSYDYSMGTTETFNPAILN---NNVAGVYSYNDKRSTLYNRAMV-SFNKSLQ 531
              L   +  + D       TF   I      N  G  S N   +T+     V ++NK+ +
Sbjct: 440  PELKFKSTLTLDRRNAVNTTFLDPISTAWGRNQYGEASDNRNMNTVLTFDNVFTYNKNFK 499

Query: 532  KDVHNIGAYVFSEVYVRNFQAHAIQQDQYTNDQYQGPFGSASASSGGGVLDNYSDSRAAS 591
            +  H +     S     ++    I    Y ND  Q    +A+  +        S     S
Sbjct: 500  R--HGLEVMAGSSWTDSDYSNSWINGSHYRNDLIQ-TLNAANKIAWDNTGTGASQWGIMS 556

Query: 592  LAASLSYNYQTKYLIEATFRLDGTSSTGLNAPWAKNPSLALKWNFNKENFLADSKWLDVG 651
                ++YN+ +KYL+ A  R DG+S    +  W   PS +  W  + E F+AD  W+D  
Sbjct: 557  FFGRVAYNFDSKYLLTANLRADGSSKLHPDHRWGVFPSFSAAWRVSSEKFMADLTWIDDF 616

Query: 652  MLRLSWGRNIAPVGNVFDANGTYDYYGNYN--------------------GIPTTAVDFN 691
             +R  WG+     GN     G Y Y   YN                     +PT  +   
Sbjct: 617  KIRGGWGQT----GNQ-SGIGDYAYLQRYNIGRIEWFKVAAEGDTTDYANAVPT--ISQA 669

Query: 692  NLPNIKLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVDNQLWEKNITTHNAF-TKLKT 750
            NL    L   TTTQ N GLDL +   R+T N D YYK   N L   ++    A  T +  
Sbjct: 670  NLRTSDLTWETTTQTNIGLDLTVLNGRLTFNMDYYYKKTKNMLMNVSLPAGAAAATSIAR 729

Query: 751  NEVSNVNYGYELALSFRPLPASSKVNWSVSINGAYNKEKITALPDATRQLLLDGGATGQA 810
            NE    N G+EL +S +     +   W    N ++N+ K+T L     Q +     T   
Sbjct: 730  NEGEMTNKGFELTISSKNFRGGA-FTWDTDFNISFNRNKLTKLE---LQKVYYDAKTADV 785

Query: 811  ILYRLGRNSLTNILYNFKGVFSTDDDVPVNPANGTRYHTFNGSTPVYFKAGDPYYADING 870
            +   + RN     L  F G  S                  +G  P   + G+  Y D++G
Sbjct: 786  VNDYVVRNEPGRALGGFYGYIS------------------DGVDP---ETGELMYRDLSG 824

Query: 871  DYVLDAKDMVGAGNSQPLINGGISSYASYKGFSLNVIMAYTWHRDILNNPLAASFQNFSS 930
            D  +   D    G+  P    G+++  S+KGF+L+V +  ++  DI N     +   +  
Sbjct: 825  DGKISTSDRTYIGDPNPDFTYGLTNTFSWKGFNLSVFIQGSYGNDIFNASRIETEGMYDG 884

Query: 931  PFSANNLVPITEYNIWRQSGDIANYPNPYDYLRYGSYSATDKSTQFLPFRYNQTLFQEDG 990
               +  ++     N W+  G I N P     L                   N T F EDG
Sbjct: 885  KNQSTKVL-----NRWKIPGQITNVPKANFKL------------------LNSTYFIEDG 921

Query: 991  SYLKLATVTVGYTFKPELTKRLGITSLRVYGTANNIHTFSFYSGADPE-----NVSSLGR 1045
            SYL+L  V++ Y FK +L ++ GIT L+ Y TA N+ T++ YSG DPE     N  ++  
Sbjct: 922  SYLRLKDVSLSYNFKGKLLQKWGITRLQPYFTATNLLTWTSYSGMDPEVNQWGNSGTVQG 981

Query: 1046 DNSGGYPVRRTYALGLNIQ 1064
             + G YP  R+Y  G+N++
Sbjct: 982  IDWGTYPHSRSYVFGINVE 1000