Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  311 bits (796), Expect = 2e-88
 Identities = 299/1102 (27%), Positives = 494/1102 (44%), Gaps = 117/1102 (10%)

Query: 16   LLLLMTLTVLGSSAWAQNLISVRGKVVDKGDGSGIPAVTIMASTATRAIGMTRDDGTFTV 75
            L+LL+      S+  AQ+   + G VVD+G  S I   TI    A     +T  DG F++
Sbjct: 21   LVLLICFLGYISTVSAQSH-KISGVVVDEGK-SPIIGATIQVKGANNGT-ITDIDGNFSL 77

Query: 76   SVPD-NATLTFKYLNYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVMGA 134
             V +  A L   Y+ +  +T+ +  K  + I M E    L+EV + +GYG   K  + G+
Sbjct: 78   EVKNPKAQLQISYIGFTTITVPVQLKGKMTITMQEASRNLDEV-VVIGYGTVRKSDLSGS 136

Query: 135  VTSLRGKDIQDV-PVSNVAELFQAKVPGLNIQNNTGSPGAAPSINMRGLSGISVTGSGDN 193
            V+++  K+  ++ P+++  +  Q ++ G++I  N+G+PGA  +I +RG+S +S       
Sbjct: 137  VSAVSMKNEAEIMPITSADQFLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGN----- 191

Query: 194  AFLTPTSPLFVIDGVPVDLNTDYQYGFSSN---GPGISPLSLIPAEDIDEILFLKDASAT 250
                 T PL+V+DG P++  T    G +S     P ++PL+ I   DI+ I  LKDASAT
Sbjct: 192  -----TDPLYVVDGFPIEAATASVNGGTSELSQQPAMNPLASINPNDIESIQVLKDASAT 246

Query: 251  ALYGAQGAYGVILINTRRGKSKTPIIQYSTNFFFNTPPKLRQVIGG----AAESNL-RLW 305
            A+YG++   GVILI T++GK     + Y+     +   K   ++        E+ L R  
Sbjct: 247  AIYGSRATNGVILITTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTS 306

Query: 306  EIYTYGANIYSARQSVDNTPMLADSLNAFYNNSTDWQSIFYRSTYNQQHNVNASGGDDSF 365
              Y    N+  + +   +T    D+L  +   STDWQ + Y++  +Q H +  +GG+   
Sbjct: 307  NGYDMQGNVIPSTKVPRHTD---DALERYKIYSTDWQDLMYQTAVSQDHQLAVNGGNKMT 363

Query: 366  NYKINLGYYDEKGIQENTGFTRYSLSMNTRYKPSPKFNVNLILSSS------LGNSQKGS 419
             Y I  GY D++GI  NTG  RYS  +N + + + +  + L  S S        +SQ  S
Sbjct: 364  QYNITAGYTDQEGIIMNTGLERYSFRLNLKSELAKRLVLQLNTSYSQTEQKQTSHSQSSS 423

Query: 420  GNGILQTGVASGAGSSSLLPGPNLINSNAALGALIVDNDN---KAGNIKTSVEAR----- 471
             N +++  + +     +L+PG  +           V  DN    A  +K  ++ R     
Sbjct: 424  MNQMVRRILTT---KPTLMPGDQIYEDE---NVEYVPADNPYIMATELKDILQQRFFILN 477

Query: 472  ----YEFLTGLAVSNITSYDYSMGTTETFNPAILN--NNVAGV-YSYNDKRSTLYNRAMV 524
                Y F  GL+     S++ + G+  T+ P   N  N+  G+ +   D R  +     V
Sbjct: 478  ASLTYNFGKGLSWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGEDNRQNIVLETTV 537

Query: 525  SFNKSLQKDVHNIGAYVFSEVYVRNFQAHAIQQDQYT-NDQYQGPFGSASASSGGGVLDN 583
            ++++  +K  H+I A +      R  +  AIQ   +  ND      G      G   +D 
Sbjct: 538  NYDRKFKKH-HHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIG-----EGTNTMDK 591

Query: 584  YS---DSRAASLAASLSYNYQTKYLIEATFRLDGTSSTGLNAPWAKNPSLALKWNFNKEN 640
             S    ++ +S    ++Y    +Y+  AT R DG+S       W+  PS A+ W  N+E 
Sbjct: 592  SSSVIQTKLSSFLGRMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEK 651

Query: 641  FLADSKWLDVGMLRLSWG----RNIAPVGNVFDANGTYDYYGNYNGIPTTAVDFNNLPNI 696
            F+ D   +    LRLS+G    ++IA    +   N    Y G   G  T  +    L N 
Sbjct: 652  FMKDIPAISNIKLRLSYGVTGNQSIAYAAPLAIMNHVRSYSG---GAVTHGMVNGKLANP 708

Query: 697  KLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVDNQLWEKNITTHNAFTKLKTNEVSNV 756
             L   +T  YNAGLDL    NR  +  + Y +   + L    +   + +  +  N     
Sbjct: 709  NLGWESTATYNAGLDLGFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMT 768

Query: 757  NYGYELALSFRPLPASSKVNWSVSINGAYNKEKITALPD---ATRQLLLDGGATGQAI-L 812
            N G+EL  S   L  + +V W++  N   N+ K+  +          L  GG   Q+I +
Sbjct: 769  NKGFELEASADIL--TGRVKWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHI 826

Query: 813  YRLGRNSLTNILYNFKGVFSTDDDVPVNPANGTRYHTFNGSTPVYFKAGDPYYADING-- 870
             + G    +   Y   GV+  + +  + P +  +      +TP     G   + DI+G  
Sbjct: 827  TKAGYPVGSFYGYVVDGVYQNEAEAKLAPFDTPQ------ATP-----GSLRFKDISGPD 875

Query: 871  ---DYVLDAKDMVGAGNSQPLINGGISSYASYKGFSLNVIMAYTWHRDI--LNNPLAASF 925
               D  + + DM   G ++P  N GI+S  S+KG +L++I       DI  LN     SF
Sbjct: 876  GLPDGKITSDDMTIIGTAEPKFNYGINSELSWKGLTLSMIFTGRVGGDIANLNRYFLDSF 935

Query: 926  QNFSSPFSANNLVPITEYNIWRQSGDIANYPNPYDYLRYGSYSATDKSTQFLPFRYNQTL 985
             +     + +N+        W+  G    YP        GS  ++  + +F       T 
Sbjct: 936  TD-----TNDNIRAEAWEGRWQGEGTSNFYP-----AVNGSQGSSYFNKRF------STF 979

Query: 986  FQEDGSYLKLATVTVGYTFKPELTKRLGITSLRVYGTANNIHTFSFYSGADPENVSSLG- 1044
              EDGS+ +L  +T+ Y F   L K   + S+RV+GT  N+ T + YSG DPE   + G 
Sbjct: 980  LLEDGSFFRLKNLTLAYQF--SLKKLRWLRSVRVFGTVTNVFTITNYSGYDPEVSITSGA 1037

Query: 1045 ---RDNSGGYPVRRTYALGLNI 1063
                 +   YP  RTY++G+N+
Sbjct: 1038 MSPNVDYAAYPSSRTYSMGINL 1059