Pairwise Alignments

Query, 1065 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1146 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  306 bits (784), Expect = 6e-87
 Identities = 295/1104 (26%), Positives = 470/1104 (42%), Gaps = 147/1104 (13%)

Query: 31   AQNLISVRGKVVDKGDGSGIPAVTIMASTATRAIGMTRD-DGTFTV-SVPDNATLTFKYL 88
            AQ   +V+G VVD     G P +           G   D DG +++ +VP++ATLT  Y+
Sbjct: 121  AQRTRTVQGVVVDD---KGEPVIGASVQIKGEGSGTITDMDGRYSLMNVPESATLTISYI 177

Query: 89   NYKDVTIKLNGKNDLKIVMVEDLTTLEEVKITVGYGQKTKETVMGAVTSLRGKDIQDVPV 148
             YK V++    KN  KI + ED   ++EV + VGYG + K  V  +++S++ + I +V  
Sbjct: 178  GYKTVSLSAKDKNTAKITLTEDSKMIDEV-VVVGYGVQRKRDVSTSISSVKAEQIAEVSA 236

Query: 149  SNVAELFQAKVPGLNIQNNTGSPGAAPSINMRGLSGISVTGSGDNAFLTPTSPLFVIDGV 208
            S+  +    K+PG+ +   +G P  + SI +RG+S ++            + PL++IDGV
Sbjct: 237  SDFRQALAGKMPGVQVTQPSGDPEGSVSIRVRGISTVNAG----------SDPLYIIDGV 286

Query: 209  PVDLNTDYQYGFSSNGPGISPLSLIPAEDIDEILFLKDASATALYGAQGAYGVILINTRR 268
            PV+       GF++          +   D++ +  LKDAS+ A+YG++G+ GVI+I T++
Sbjct: 287  PVER------GFAN----------LNNNDVESVEVLKDASSAAIYGSRGSNGVIIITTKQ 330

Query: 269  GKSKTPIIQYSTNFFFNTPPKLRQVIGG------AAESNLRLWEIYTYGANIYSARQSVD 322
            G+S+   +QY   +   +  K   ++        A + +   +     G +         
Sbjct: 331  GQSEKMKVQYDGYYGIQSISKKLPMLNAYQFAEFAKDGHDNSYLDANPGGSPNDPNGMRP 390

Query: 323  NT-PMLADSLNAFYNNS-----TDWQSIFYRSTYNQQHNVNASGGDDSFNYKINLGYYDE 376
            N+   +   L  + N       TDWQ   +RS     HNV+ SG   +  Y I+  YYD+
Sbjct: 391  NSWERIPTELFPYLNGDQGLTDTDWQDAIFRSAATTSHNVSISGRGKTVGYFISANYYDK 450

Query: 377  KGIQENTGFTRYSLSMNT--RYKPSPKFNVNLILSSSLGNSQKGSG-NGILQTG------ 427
            +GI  N+ F +YS+ MN   +YK   KF +N   S S  N    SG NGI+Q+       
Sbjct: 451  EGIIINSDFKKYSMRMNLDGKYK-RLKFGLNFSPSYSTSNRVDASGSNGIVQSALMMPPV 509

Query: 428  --VASGAGSSSLLPG-----PNLINSNAALGALIVDN------DNKAGNIKTSVEARYEF 474
              V +  GS +          N    NA L  + + N      D  A  I   V A  E 
Sbjct: 510  WPVYNSDGSYNYQGNGYWRIGNDYQHNAVLNPVAMANLQSDVVDRMA--IVGKVFAELEL 567

Query: 475  LTGLAVSNITSYDYSMGTTETFNPAILNNNVAGVYSYNDKRS-TLYNRAMVSFNKSLQKD 533
              GL  +     DY     + +  + L   + G   Y+ K + T Y+ +   FN  ++  
Sbjct: 568  FKGLTYNISFGGDYYGSHNDQYRSSEL--PLLGQKYYDIKSNPTAYSSSGFYFNWLIENK 625

Query: 534  V---------HNIGAYVFSEVYVRNFQAHAIQQDQYTNDQYQGPFGSASASSGGGVLDNY 584
            +         H+I A +        ++   +    + ND  Q         SGG V+   
Sbjct: 626  INYNTVINEDHSINAVLVQSAQKETYKGDNVTATDFPNDYIQ-------TISGGTVIKGA 678

Query: 585  SDSRAASLA---ASLSYNYQTKYLIEATFRLDGTSSTGLNAPWAKNPSLALKWNFNKENF 641
            SD    S+A   A + Y+Y+ KY+     R DG+S  G N  W   PS +L W  + E+F
Sbjct: 679  SDKTQWSIASYLARVQYSYKGKYMASGAIRADGSSRFGKNNRWGYFPSASLAWRVSGEDF 738

Query: 642  LADSKWL---DVGMLRLSWGRNIAPVGNVFDANGTYDY----------YGNYNGIPTTAV 688
               +K+L   D   +R S+G      GN     G YD+           G  NG      
Sbjct: 739  FTKAKFLSFVDDLKIRTSYG----VTGNF--QIGNYDHLSLMALDNYILGTGNGQLVQGY 792

Query: 689  DFNNLPNIKLLPTTTTQYNAGLDLNLFKNRITLNFDTYYKMVDNQLWEKNITTHNAFTKL 748
              N + N  L        N G+DL +FK  + +  D Y     N L    +     ++  
Sbjct: 793  KPNTIKNDDLSWEKNAMVNVGVDLQMFKGLLGITVDYYNTNTSNMLLNVPVPHLTGYSTA 852

Query: 749  KTNEVSNVNYGYELALSFRPLPASSKVNWSVSINGAYNKEKITALPDATRQLLLDGGATG 808
              N     N G+E+AL+ +    +    +S + N A N  ++ AL      ++  G    
Sbjct: 853  LMNIGKVNNRGWEIALTSQK-NFTKDFGYSFNANYATNTNEVKALGPGNAPIISTGSVDH 911

Query: 809  QAILYRLGRNSLTNILYNFKGVFSTDDDVPVNPANGTRYHTFNGSTPVYFKAGDPYYADI 868
               + ++G       L    G+FS ++++        +Y  F+ + P     GD  + D+
Sbjct: 912  AYYITKVGEPIGCYYLLVQDGIFSNEEEL-------KKYPHFSNTQP-----GDFRFVDV 959

Query: 869  NGDYVLDA-KDMVGAGNSQPLINGGISSYASYKGFSLNVIMAYTWHRDILNNPLAASFQN 927
            +GD V+D  KD    GN  P    G      YKG  L+      +  +ILN       + 
Sbjct: 960  DGDGVMDLDKDRTIVGNYMPDFTYGFGGKVWYKGIDLDFNFQGVYGNEILN-----LNRR 1014

Query: 928  FSSPFSANNLVPITEYNIWRQSGDIANYPNPYDYLRYGSYSATDKSTQFLPFRYNQTLFQ 987
            +      N        N W+ + +  N          G  +  ++ ++    R   T   
Sbjct: 1015 YIDNLEGNTNGTTIALNRWKSADNPGN----------GQVNRANRKSKGYNGR-TSTWHL 1063

Query: 988  EDGSYLKLATVTVGYTFKPELTKRLGITSLRVYGTANNIHTFSFYSGADPE------NVS 1041
            EDGSYL+L  VT+GYT    LT+R  +  LRVY +  N+ T + Y G +PE      N  
Sbjct: 1064 EDGSYLRLQNVTLGYTLPQNLTRRFFVEKLRVYVSGQNLWTSTNYGGYNPEVNARPSNSL 1123

Query: 1042 SLGRDNSGGYPVRRTYALGLNIQL 1065
            S G D  G YP+ +T+  GLNI L
Sbjct: 1124 SPGED-YGTYPLAKTFLFGLNITL 1146