Pairwise Alignments

Query, 829 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 853 a.a., putative TonB-dependent receptor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  194 bits (494), Expect = 1e-53
 Identities = 213/865 (24%), Positives = 365/865 (42%), Gaps = 86/865 (9%)

Query: 18  LLSYIFPLVLCFLWSKPVCAQTDSAISGIVV---MENGSPVEFASVALQDADGKGIKGTL 74
           LL ++F  V+   W++   A     + G+++    ++G P     +  + A  K +K  +
Sbjct: 8   LLLFVFTAVMTG-WAQN-SAMPSYTVKGVLLDSLTQDGEPYATIKITKKGAPDKAVKMAV 65

Query: 75  TDSLGRFSFPA-LQHGSYRVKISNMGYITHHTDVIQISIQHRVIGLGRLKLIEDAQTLNA 133
           T + GRF     +  G Y + IS++G     T    +    RVI LG +   E    L  
Sbjct: 66  TGANGRFQEKLNVGAGDYVITISSIGKAPV-TKEFTLKPSVRVIDLGTMLSAEANNELKG 124

Query: 134 VNISVQKKVIEQSIDKMTINVENSILSEGNTALELLQRVPGIKVDDEGKISLKGRAGVNV 193
           V +  QK +++  +DK+  N+E+   S+ N+ LE+L++VP + VD E  I + G +   +
Sbjct: 125 VEVVAQKPLVKVDVDKIEYNIEDDPDSKSNSILEMLRKVPLVTVDGEDNIQVNGSSSFKI 184

Query: 194 MINGKLTYLSPAELSVLLKGTNSASVSKIELMANPSVKYDAAGNAGIINIVMKKNQMKGL 253
            +NGK   +       +LK   + S+  IE++ +P  KYDA G  GI+NIV      +G 
Sbjct: 185 HVNGKPNNMMSNNPKEVLKSMPANSIKYIEVITSPGAKYDAEGVGGILNIVTVGGGFEGY 244

Query: 254 NGSLAVNGGLGRKARYGSGFN--LNYKNAGFNVYGSYNYAYRGETEYLDFSRRFYNNGHV 311
             +   N      + YG+G       K     V  +YN+ Y           R Y++ + 
Sbjct: 245 TATFRANA-----SNYGAGAGGYAMVKQGKMTVSANYNFNYNDRP-------RGYSDSY- 291

Query: 312 AGNYDRISNQHTETNEPLNT-NNFRVG-----MDVDLDPQNAIGFLVNGNIGKYLHDSQT 365
             NY+  + ++ E+N    +  NF+ G      ++D      + F + G+  K   D  T
Sbjct: 292 RENYESDTEKYLESNSSSKSKGNFQYGNLEGSYEIDTLRLLTVAFGMYGSNSKNYGDGFT 351

Query: 366 SNILQNQQGIIQSDMATTNYDQQHWSNLTYNLNY---LHKFKKEARTFSADVDFASNSFT 422
           +    N + I  S   T N+    W ++  N++Y     K K+   TFS  ++    +  
Sbjct: 352 TMYGANHEDIAYS-YRTGNHGDGSWYSINGNIDYQRTSRKNKQRMITFSYKINTQPQTSN 410

Query: 423 SRLNLDTYSA----PDVSAPAQTSNRKGYVPAKTDVYVGKVDYTDQLGKAIKIESGLKSS 478
           S    +   A     D+       N +      T     +VDYT  +G+   +E+G K  
Sbjct: 411 SNTGYEDIHAKEEVDDLVKRLLLKNSQSDGKTNTMEQTFQVDYTTPIGELHTVEAGAKYI 470

Query: 479 F--ITSDNNLVYQNLTDGAWVYDPAGSNYFKYKEQIHAAYLNLNREFKSFTLQLGLRGEY 536
           F   TSDN L         ++Y+   S+ +++   I AAYL    ++K FT + G+R E 
Sbjct: 471 FRRNTSDNKLYEAAGGSDDYLYNEDRSSDYRHLNHILAAYLGYTLKYKDFTFKPGVRYEQ 530

Query: 537 T-HTLGNQVTTGSLIKRNYFQLFPNLALNKTAGENNQFQLAYSRRVQRPDYGDLNPFRVF 595
           T   +   V  G     N+  L P+++L    G+    ++ Y+ R+ RP   +LNP+   
Sbjct: 531 TVQRVKYIVGPGENFHTNFSDLVPSVSLGMKLGKTQNMRVGYNMRIWRPGIWNLNPYFNN 590

Query: 596 RDPLLYYEGNPYLTPELTQNIVLSHI-FKSKY--TTALNYS-------RTTDVITWVSGQ 645
            +P+   +GN  L  E +    LS+  F +K+    +L +S         + +IT   G+
Sbjct: 591 LNPMFITQGNSNLKSEKSHAFDLSYSNFSAKFNINVSLRHSFNNNSIENISRLITAPEGE 650

Query: 646 IDNLNTTYERPQN--LKSLVNYGVS-FTGQTNYFSWWTATNFANIYNN------------ 690
           + + + T+  P+     +  N G S  TG + Y + W A+    +Y N            
Sbjct: 651 MFDNDPTHIAPEGALYSTYANIGKSRNTGMSLYLN-WNASPKTRLYVNGRGNYSDLKSEA 709

Query: 691 --IYRGGEDSGAFKNSQISFTINTQNSFKLGGGYSAELNAYYHSKSVYGISTKKSYHSVS 748
             ++  G +   +   Q +  +  + S   GGG +  +N                Y+  S
Sbjct: 710 QGLHNYGWNGSFYGGVQHTLPLKIRLSLN-GGGSTPYINLQ---------GKGSGYYYYS 759

Query: 749 VAFQKNLLKD-KASLKLLVNDIFQS-SQYKQITRYQNIDMYSHVNVDGRRVMLSFSYRFG 806
           +   ++ LKD + SL +  ++IF+    Y   T   N    S      R   +S SYR G
Sbjct: 760 LGASRSFLKDERLSLNVYCSNIFEKYRSYNNHTEGVNFLSKSSSKWPSRSFGVSISYRIG 819

Query: 807 N---SFSTKERKRGNDDIQNRVKGG 828
               S     R   NDD    VKGG
Sbjct: 820 ELKASVKKAARSINNDD----VKGG 840