Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 598 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  144 bits (363), Expect = 1e-38
 Identities = 163/617 (26%), Positives = 264/617 (42%), Gaps = 115/617 (18%)

Query: 30  FFLASCKKGFLDREPLDSVT-DISFWKTEEQLKLAA---NACYSNLRNNNTIA----MEN 81
           F   SC  G+ + EP++ V+ D  F KT+     A    N  Y+ L+N +       ++ 
Sbjct: 19  FTAVSCTDGY-EPEPVELVSIDFVFSKTDSLGTNAVKFMNNIYATLQNGHNRVGSDYLDA 77

Query: 82  MGDNTIYPPNSEYQAISAGNYDFTSGTL---NSEWVNLYAAIRRCN---------HFLEN 129
             D+ I    S+          +T+ T    +  W   Y+ IR+ N          F+  
Sbjct: 78  ASDDAISINVSDPDVYKLAMGRYTASTRVESDMRWKEYYSGIRKANILINHIDVVPFMLT 137

Query: 130 YTKATNISATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAE 189
           Y  A   +         E RFLRA+ Y  L+  +G VPL+   + I  +++  PRN   +
Sbjct: 138 YKNAKGETKPLNVTMKAEARFLRAYFYFELVKRYGGVPLMGDDVHILGDDMEIPRNTFEQ 197

Query: 190 VLEFVFADLDAAAAGLPT---------AYTAADLGRITKGAAFAWKARVALFF------- 233
            ++++  +LD     L T         A+T       T+ A  A K+RV L+        
Sbjct: 198 CVQYICDELDDIKDDLRTNPMPDFEQYAHTP------TREACLALKSRVLLYAASPLFNE 251

Query: 234 -----------------EKWSIAEAAAKSVMD------LNVYQL--YTAGGTAKCYNDLF 268
                            E+W+ A  AAK+ +D         Y L   T+ G  + + D+F
Sbjct: 252 RPIEIGNELIGYASYDRERWNDAAKAAKTFIDEYGPNGNGAYGLTQSTSDGDNRDFRDVF 311

Query: 269 TYKGKLAGGANKETILARPNVAGVSVHNTSREIQVPDQT---SRYSPTKSLVDAYLCIDG 325
              G      N E I  RP     S+ + +  +          R  PT++LVDA+   DG
Sbjct: 312 L--GFYNKTNNPEVIFYRPGGEDKSIESNNGPLGFSGDNLGKGRTLPTQNLVDAFPMKDG 369

Query: 326 LPIDKSPLYSESTYADIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNAD 385
           +   +   Y+    ++ ++NRDPR++ TIL  G +W    +   D +   + N P  +A+
Sbjct: 370 MFAGQGSKYT-LNQSNPYENRDPRLDYTILHHGSSW---LNNTLDISIGGV-NNPSNSAE 424

Query: 386 KKGCITGTGFYFSKYVEVAAVGTVSQDSNDIH---HIRYAEVLLTFAEARLEQGTLTQTD 442
                + TG+Y  K+  +   G  SQ  N IH     RYAE+LL +AEA  E  +    D
Sbjct: 425 ----YSKTGYYMCKF--MGKFGEESQYGNKIHLWVMFRYAEMLLNYAEAMNEYLSSPSQD 478

Query: 443 IDNTINKLRDRVGMKRMVITELAAAGL-------DLRTEIRRERRVELALEGQRYYDILR 495
           + + I  LR R G++     + +  GL       ++R  I+ ERR+E+A E QRY+DI R
Sbjct: 479 VYDAIIALRARAGIESG--NDESPYGLKKNMTQAEMREVIQNERRIEMAFEEQRYWDIRR 536

Query: 496 WK-QGDLLAQDVKGMK---KSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPI 551
           W+   ++    ++G++   K    SFN+  V +   D                K YL+PI
Sbjct: 537 WRIAEEIFKNPLEGLEIRVKGNTTSFNEVDVLSTTFDV---------------KRYLYPI 581

Query: 552 PITQLQRNPVLGQNPGW 568
           P  ++ +N  + QNP W
Sbjct: 582 PYNEVVKNDNMIQNPKW 598