Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 621 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  149 bits (377), Expect = 2e-40
 Identities = 176/613 (28%), Positives = 250/613 (40%), Gaps = 88/613 (14%)

Query: 32  LASCKKGFLDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENMGD--NTIYP 89
           L++C   FLDR+PL    + +F    EQ++   NA Y  L       M   G+  N+   
Sbjct: 16  LSACSD-FLDRKPLTQPDNTTFLSGREQVENYINALYPALPAPAQYGMGVRGEEVNSDNI 74

Query: 90  PNSEYQAISAGNYDFTSGTLNSEWVNLYAAIRRCNHFLENYTKATNISATALAQYAGEVR 149
              +Y     G  +  SG+  S+W   Y  +R  N+F   Y          +    GE  
Sbjct: 75  LAEKYDMRLNGENNLFSGS--SDWKKGYENLRDVNYFFYYYCVPEIEETAEIQSLRGEAY 132

Query: 150 FLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFG---PRNKRAEVLEFVFADLDAAAAGLP 206
           FLRA+ + YL+  FGD+P++    D G+  V G   P  KR++V  F+ +DL AA   LP
Sbjct: 133 FLRAYWHFYLLTRFGDIPIMDDFWD-GNATVAGLQIPATKRSDVARFILSDLKAAIGELP 191

Query: 207 TAYTAADLG--------RITKGAAFAWKARVALF---FEKWSIAEAAAKSVMDLNVYQLY 255
              T A L         RI K AA     RVAL+   +EK+      AK       YQ  
Sbjct: 192 E--TRASLFSRSKYQGLRINKEAAIILAMRVALYEGSWEKYHKGTEFAKEDNSAEFYQEV 249

Query: 256 TAGGTAKCYNDLFTYKGKLAGGANKETILARPNVAGVSVHNTSREIQVPDQTSRYS---- 311
              G  + +    T   K    ++KE I A    A +        IQ      +YS    
Sbjct: 250 LNWGDQQLFPAGLTLNTK---DSDKEAISAEDAFAHLFNKKDLSGIQEAVFWKKYSLNDG 306

Query: 312 ---------------------PTKSLVDAYLCIDGLPIDKSPLYSESTYADIFKNRDPRM 350
                                 +KSLVD YL  DG  ID + L  +  +  +FK+RD R+
Sbjct: 307 IFNALGGLLSSGVVNTDGPAGLSKSLVDNYLYTDGTFIDPAELKFKD-FNQMFKDRDARL 365

Query: 351 NQTILTPGGAWGGQDDGDADATTNPIFNTPKWNADK---------KGCITG-------TG 394
             T++  G  +       A    N     P    ++            + G       TG
Sbjct: 366 LATVMHTGCKYRSNAGATASKPMNVRAYDPTGTKEEIKLKNDDIVSPSLNGNGNSKNVTG 425

Query: 395 FYFSKYVEVAAVGTVSQDSNDIHHIRYAEVLLTFAEARLEQGTLTQTDIDNTINKLRDRV 454
           F+    ++   V   S+ +  I   RYAE LL +AEA  E           TI  LR+R 
Sbjct: 426 FHIRMGIDTTYVDGNSETA--IIMFRYAEGLLCYAEAAAELNKYDDNVAAKTIKALRERA 483

Query: 455 GMKRMVIT---ELAAAGLD-LRTEIRRERRVELALEGQRYYDILRWK-QGDLLAQDVK-- 507
           G+K +  T        G+  +  EIRRERR ELAL+G R  D++RW   G L   D +  
Sbjct: 484 GVKYITPTTDPNFPFTGISPVIQEIRRERRSELALQGFRLDDLMRWAGAGTLKGIDGRGR 543

Query: 508 ----GMKKSLVESFN---QQYVATIATDANGYF-----VVNTGRKFVAPKNYLWPIPITQ 555
               G +  L  SF+   Q+ +  +  D  G+       +  G  F   ++YL PIP  +
Sbjct: 544 GAYLGKEGILYRSFSPEGQESLKLVLKDNEGWMDPLQQYLPNGYLFDLKRDYLLPIPQDE 603

Query: 556 LQRNPVLGQNPGW 568
           LQ N  L QNPGW
Sbjct: 604 LQLNRQLRQNPGW 616