Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 572 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  190 bits (482), Expect = 2e-52
 Identities = 181/584 (30%), Positives = 272/584 (46%), Gaps = 87/584 (14%)

Query: 40  LDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENMGDNTIYPPNSEYQAISA 99
           L+  PL S +  +++ TE ++++A +  Y                   +P + + Q   +
Sbjct: 21  LNLNPLSSGSTENWYSTETEVQMAVDELYRY---------------DFWPEDGQQQTDWS 65

Query: 100 GNY-------DFTSGTLNSE-------WVNLYAAIRRCNHFLENYTKA--TNISATALAQ 143
            +Y        F  GTLN +       W N Y AI R N  +E   +A     SAT + +
Sbjct: 66  DDYTSRDLLTSFDDGTLNGQNAWVTSLWGNQYKAISRANAVIEKSHRAIENGASATTINR 125

Query: 144 YAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAEVLEFVFADLDAAAA 203
              E +F RA  Y  LI  FGD+PL+   +   +    G R  ++ VL  ++ D D A +
Sbjct: 126 LIAEAKFHRAAAYAKLIVKFGDLPLVLTDVSTEEGLTMG-RTDKSIVLAQIYKDFDDAIS 184

Query: 204 GLPTAYTAADLGRITKGAAFAWKARVALFFEKWSIAEAAAKSVMDLNVYQLYTAGG---- 259
            LPT+YT  D  R T+GAA A KARVAL  E W  A  AAK+VMDLN+Y+L+   G    
Sbjct: 185 VLPTSYT--DQQRATQGAALALKARVALIMEDWETAADAAKAVMDLNIYELHPDFGNLFL 242

Query: 260 -TAKCYNDLFTYKGKLAGGANKETILARPNVAGVSVHN-TSREIQVPDQTSRYSPTKSLV 317
            T K  N+      K+   A  +  L   N     V+N   R +    QT    P+  L+
Sbjct: 243 STTKNSNEFIF---KIPRDATYDIYLGTGNGGVNQVYNDLPRNVGGWTQT---CPSWELL 296

Query: 318 DAYLCIDGLPIDKSPLYSESTYADIFKNRDPRMNQTILTPGGAWGGQD-DGDADATTNPI 376
            A+ C DGL I++SPL+      + F NRDPR+ +TI+  G    G + +   +A T   
Sbjct: 297 AAFTCTDGLLINESPLFDPH---EPFANRDPRLAETIVPFGSNHLGYEYNPHPEALTCMN 353

Query: 377 FNTPK--WNADKKG---CITGTGFYFSKYVEVAAVGTVSQDSNDIHHIRYAEVLLTFAEA 431
           +NT +   N D +      +  G  + K ++   +    +   DI + RYAE+LLT+AEA
Sbjct: 354 YNTGEIVTNYDTRANAQYASFDGLVWKKGIDETWLQNGFKVDQDIIYCRYAEILLTYAEA 413

Query: 432 RLEQGTLTQTDIDNTINKLRDRV-GMKRMVITELAAAGLD----LRTEIRRERRVELALE 486
           ++E   +  + +D  +N++R R  G+ +       A   +    LR ++R ERR+E+A E
Sbjct: 414 KIELNEIDNSVLD-ALNEVRARAYGVDKSDKASYPAFTSNDQSTLRHQLRVERRMEMAKE 472

Query: 487 GQRYYDILRWKQGDLLAQDVKGMK--------KSLVESFNQQ----YVATIATDANG--- 531
             RY DI+RWK    LA+ V   K           +E    Q    +  T   D +G   
Sbjct: 473 HMRYTDIIRWK----LAEKVMNRKTYGILYPASLCIERVTSQGDWFWAFTPEMDEDGCAD 528

Query: 532 YFVVNTGRKFVA-------PKNYLWPIPITQLQRNPVLGQNPGW 568
           +  +    K  A        + YLWPIP T+LQ N  L QNPG+
Sbjct: 529 FSKLEEAGKCQALAVRSWNDRQYLWPIPTTELQINENLKQNPGY 572