Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 580 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  189 bits (480), Expect = 3e-52
 Identities = 181/612 (29%), Positives = 273/612 (44%), Gaps = 90/612 (14%)

Query: 15  LKATGLLGGAALIPSFFLASCKKGFLDREPLDSVTDISFWKTEEQLKLAANACYSNLR-- 72
           ++   ++    L  S  L S  + +L+ EP D   D + W +EE   +  N  Y+ L   
Sbjct: 1   MRIHNIIKTVCLAGSLALLSACEDWLEIEPKDRFGDTTVWGSEENADMFLNDIYNQLPHL 60

Query: 73  NNNTIAMENMGDN------------TIYPPNSEYQAISAGNYDFTSGTL--NSEWVNLYA 118
           NN T  ++   DN            TIY       +   G +D        N +    Y 
Sbjct: 61  NNETQNLDQYSDNSYVGAEWMNARTTIYTGALSPTSWIPGPWDMWKWGRQNNDDAKGQYE 120

Query: 119 AIRRCNHFLENYTKATNISATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIG-D 177
            IR CN F+   T++ + SA    +   EVRFLRA+ Y YL   +G VP++++ LD    
Sbjct: 121 RIRSCNLFITKVTES-DFSAEYKKERLAEVRFLRAWFYHYLWMAYGGVPIITEVLDNNVS 179

Query: 178 EEVFGPRNKRAEVLEFVFADLDAAAAGLPTAYTAADLGRITKGAAFAWKARVALFF---- 233
            ++F PR    +  EF+  +LD     LP   + +DLGR +KGA    K  V LF     
Sbjct: 180 TDIFYPRETAQKTFEFIDKELDEIKDDLPPRRSGSDLGRASKGAILTLKGWVELFHASEL 239

Query: 234 -------EKWSIAEAAAKSVMDLNVYQLYTA----GGTAKCYND--LFTYKGKLAGGANK 280
                  ++W  A A  K V+DL VY L          A   ND  +F ++     G  +
Sbjct: 240 RNPGKDKKRWEAAAATLKDVIDLQVYHLQPTILDLWTEATNNNDEVIFDFQMSKQNGGRR 299

Query: 281 ETILARPNVAGVSVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDGLPI-DKSPLYSESTY 339
           E +     V GV                   PT+ LVD Y   +GLPI D +  Y+++  
Sbjct: 300 EGLFGPVFVKGVQ-----------SSWGNMQPTQELVDDYCMANGLPITDPASGYNKN-- 346

Query: 340 ADIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNADKKGCITGTGFYFSK 399
            + +KNR+ R  Q+IL  G  W G++        +P  N    ++D    +T TG+Y  K
Sbjct: 347 -NPYKNREKRFYQSILYDGSMWQGEEIITRVGVGSP--NEIDTSSDSD--VTNTGYYTRK 401

Query: 400 YVEVAAVGTVS-QDSNDIHH---IRYAEVLLTFAEARLEQGTLTQTDIDNTINKLRDRVG 455
            ++ +  G  + Q SN + +    RYA+VLL +AEA LE G    T I+  ++ +R R G
Sbjct: 402 TIDESVNGADNLQMSNGMANYIFFRYADVLLMYAEASLEAGD-KPTAIEY-LDMVRTR-G 458

Query: 456 MKRMVITELAAAGL---DLRTEIRRERRVELALEGQRYYDILRWK----QGDLLAQDVKG 508
                I +    G+    LR  IRR+RR+ELA E +R++DILRWK    +  ++ + + G
Sbjct: 459 DNMPSIGDTYPQGITENQLREIIRRDRRIELAFEDKRWWDILRWKICDGENGVMNKPIGG 518

Query: 509 MKKSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNPVL------ 562
           MK   +E  N   V         Y     G++   P+ Y  PIP   + +NPV+      
Sbjct: 519 MK---IEDTNGDGVWE-------YNYHEVGKRTFLPRMYYQPIPQYVIDKNPVIREQNGG 568

Query: 563 ------GQNPGW 568
                 GQNPG+
Sbjct: 569 EDGWVNGQNPGY 580