Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 553 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (351), Expect = 2e-37
 Identities = 159/587 (27%), Positives = 235/587 (40%), Gaps = 95/587 (16%)

Query: 29  SFFLASCKKGFLDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENMGDNTIY 88
           S  L SC   +LD  P D  +D   W   E  + A N  Y   R  + + +   G     
Sbjct: 14  SLGLGSCSD-YLDMTPTDKASDKLVWSKLEYAEQAVNDFY---RYIDYLGVYRDGQCLAG 69

Query: 89  PPNSEYQAISAGNYDFTS--------------------GTLNSEWVNLYAAIRRCNHFLE 128
              +    +  G+Y++ S                     T    W  +Y  +RR N  L 
Sbjct: 70  MTEALTDQLKYGSYNYMSKCQIPSEIAYGGSVLTVSYVSTYLGNWGTMYEYVRRVNEGLN 129

Query: 129 NYTKATNISATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRA 188
              K  +   T   +   E+RF R ++YT L+  + +V +  + LD   +++  P +  A
Sbjct: 130 KLKKYASFGQTEQERLEAEMRFFRGYLYTDLVKRYKEVIIYDEDLDNIKKDM--PVSSEA 187

Query: 189 EVLEFVFADLDAAAAGLPTAYTAADLGRITKGAAFAWKARVALFFEKWSIAEAAAKSVMD 248
           E   FV+ DL  A   LP   T    GR+T GAA+A  +R  L+ E+W  A  AA+ VM 
Sbjct: 188 EGWNFVYEDLKFAGEHLPVDKTPN--GRLTSGAAYAMLSRAMLYAERWDDARIAAEEVMG 245

Query: 249 L--------NVYQLYTAGGTAK----CYNDLFT----YKGKLAGGANKETILARPNVAGV 292
           +        N    + AG        CY+   T    + G +A G +K  +       G 
Sbjct: 246 MGYKLEEKENYSNAFKAGSQEAILQYCYDKSSTVTHDFDGYMAPGGDK-ALDGNSMTGGF 304

Query: 293 SVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDGLPI-DKSPLYSE--STYADIFKNRDPR 349
                             +PT+ +V++Y   DG    D S  ++   +T    +   +PR
Sbjct: 305 G-----------------TPTQEMVESYEYADGSGFPDWSTWHTAEGTTATPPYDKLEPR 347

Query: 350 MNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNADKK--GCITGTGFYFSKYV-EVAAV 406
              TIL  G  W G+      +  N       W  D K  G  T TG+Y  K V E  + 
Sbjct: 348 FKATILYNGATWKGR---TIASYVNGTDGWAAWKTDAKPEGRST-TGYYLRKLVDETHSF 403

Query: 407 GTVSQDSNDIHHIRYAEVLLTFAEARLE-QGTLTQTDIDNTINKLRDRVGMKRMVITELA 465
            +V   +     IRYAEVLL  AEA     G   + + D  I  +R+RVG+         
Sbjct: 404 TSVQASTQPWTEIRYAEVLLNHAEACYHLSGYADKANKD--IKDIRNRVGLPYS-----D 456

Query: 466 AAGLDLRTEIRRERRVELALEGQRYYDILRWKQGDLLAQDVK--GMK--KSLVESFNQQY 521
            +G DL   IR+ER+VELA EG  Y+D+ RWK        ++  G+K  ++   SFN  Y
Sbjct: 457 KSGEDLMKAIRQERKVELAYEGHYYWDMRRWKLSATAFTGIRLHGLKIEQNANGSFNYIY 516

Query: 522 VATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNPVLGQNPGW 568
           V     D N              K Y +P+P  +L  N  + Q   W
Sbjct: 517 VECDDKDRN-----------FPTKMYRFPMPQAELDNNGAVTQYAEW 552