Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 591 a.a., putative outer membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  162 bits (409), Expect = 5e-44
 Identities = 183/606 (30%), Positives = 260/606 (42%), Gaps = 104/606 (17%)

Query: 32  LASCKK---GFLDREPLDSVTD---ISFWKTEEQLKLAANACYSNLRNN----NTIAMEN 81
           L SC+    GFLD++P + +T+    S W T  +        Y+ LR+     N   M+ 
Sbjct: 19  LTSCEDIFGGFLDKQPSNELTEEEVFSQWTTTREFHFDT---YNFLRHGACRINNSWMDA 75

Query: 82  MGD--NTIYPPNSEYQAISAGNYDFTSGT---LNSEWVNLYAAIRRCNHFLENYT---KA 133
             D   T Y       + + GNY + SG    L   W + Y  IR+CN  L+N     KA
Sbjct: 76  ATDLAETSYASGGTRTSFNIGNY-YASGAATELTGTWEHYYRGIRKCNMLLKNIDDVPKA 134

Query: 134 TNIS----ATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAE 189
           T+ S    AT + QY  E  FLRA+ Y  +   +G VPL++  LD  D ++      R  
Sbjct: 135 TDDSEEAHATYVKQYKAEAHFLRAYFYWEMFLRYGPVPLVTDVLD-PDGDLLSNYTTRPS 193

Query: 190 ----VLEFVFADLDAAAAGLPTAYTAADL---GRITKGAAFAWKARVALFFE-------- 234
               V++F+  +L     GL    T+A+    GRI++  A A  +RV L+          
Sbjct: 194 LKEYVVDFILKELKDCEEGLMDKATSAESGNPGRISQPMARALYSRVMLYMASDRFRSES 253

Query: 235 --KWSIAEAAAKSVMD--LNVYQLYTAGGTAK-CYNDLFTYKGKLAGGANKETILARPNV 289
              W  A  AA+S M     +Y LYT     K CY +            N ETI  R +V
Sbjct: 254 GISWQQAADAAQSFMTDYGTLYGLYTTDTDPKTCYTNAILKNAH--DEKNNETIFWRNDV 311

Query: 290 A---GVSVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDG-LPIDK-----SPLYSESTYA 340
           A   G   ++T              P+++LVD Y   +G  P        +P+Y+ +   
Sbjct: 312 AVGWGAIYNDTP---VGEGGNGGLCPSQNLVDMYDMANGQSPFSSYDETGAPVYNGTATP 368

Query: 341 -----------DIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNADK--- 386
                      D + NRDPR+  T+L  G  WG           N I N  K   D    
Sbjct: 369 AINNASGYKSNDPYSNRDPRLAATVLYNGVNWG-----------NGIINVLKGQRDNPQG 417

Query: 387 KGCITGTGFYFSKYVEVAAVGTVSQDSNDIHH--IRYAEVLLTFAEARLEQGTLTQTDID 444
               T TG+Y  KY+    +      SN  +   IRYAE+LL +AEA  E G  ++ D+ 
Sbjct: 418 NANATPTGYYTRKYIPEVILNNNHTGSNYRNWIIIRYAEILLNYAEALNEAGG-SRADVL 476

Query: 445 NTINKLRDRVGMKRMVITELAAAGL-DLRTEIRRERRVELALEGQRYYDILRWKQGD-LL 502
           N I  LRDRVGM   +        + D R  IR+ER VELA E  R +D+ RW   +  L
Sbjct: 477 NAIQPLRDRVGMTAKLTDRSDLQTIADRRNFIRKERTVELAFEDHRAWDVRRWNVAEKAL 536

Query: 503 AQDVKGMKKSLVESFNQQYVATIATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNPVL 562
           A+ + GM+   V   N ++V T     N  F           K YL+PIP  ++ +  + 
Sbjct: 537 ARPIYGME---VTKENGKFVYTRKVAQNRVF---------TEKMYLYPIPEGEVWKTNI- 583

Query: 563 GQNPGW 568
             NPGW
Sbjct: 584 ENNPGW 589