Pairwise Alignments

Query, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 579 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  216 bits (551), Expect = 2e-60
 Identities = 195/584 (33%), Positives = 271/584 (46%), Gaps = 83/584 (14%)

Query: 40  LDREPLDSVTDISFWKTEEQLKLAANACYSNLRNNNTIAMENM-----GDNTIYPPNSEY 94
           LD EP D +   + W +    K  AN  YS  R+ +++  +        D   Y     Y
Sbjct: 22  LDLEPQDQLGGKNMWTSVNDYKQFANTFYSWTRDFSSVVYDGTHSDKRSDLITY---QSY 78

Query: 95  QAISAGNYDFTSGTLNSEWVNLYAAIRRCNHFLEN---YTKATNISATALAQYAGEVRFL 151
              S G     S   N  + + Y  IRR N  L+N   Y K  +I      QY GE  F 
Sbjct: 79  NEFSRGINSIPSSDAN--YTDNYKHIRRTNLLLQNAEAYAKPEDIK-----QYIGEAYFF 131

Query: 152 RAFMYTYLIFLFGDVPLLSKTLDIGDEEVFGPRNKRAEVLEFVFADLDAAAAGLPT--AY 209
           RA+ Y  L+ L+GDV +  K LDI D E+   RN R+EV++ +  DL+ A   LP     
Sbjct: 132 RAYSYFDLLQLYGDVIITKKPLDITDPEMKVKRNDRSEVVDLIIDDLNHAVENLPAFKEL 191

Query: 210 TAADLGRITKGAAFAWKARVALFFEKW-----------------SIAEAAAKSVMDLN-- 250
           T  + GRI+K  A A+ +RVAL+   W                  IA  AA++V+D    
Sbjct: 192 TTEEEGRISKEGAQAFLSRVALYEGTWQKSRNGNQNTQRSANLLDIAAKAARTVIDAKYG 251

Query: 251 -VYQLYTAGGTAKCYND--------LFTYKGKLAG---GANKETILAR--PNVAGVSVHN 296
             ++L+      K   D        L   K   AG    +N E I AR    V      N
Sbjct: 252 YTFRLFGTDSETKILGDSAQKYMFILENEKSNPAGIKKSSNHEYIFARRHDQVLASIGKN 311

Query: 297 TSREIQVPDQTSRYSPTKSLVDAYLCIDGLPIDKSPLYSE-STYADIFKNRDPRMNQTIL 355
            ++E     Q      T+   + YLC DGLPI+KS  + +       F NRD RM  T+L
Sbjct: 312 ITQECLANVQW----VTRKFANLYLCDDGLPIEKSGRFQKYDKKVSEFLNRDNRMRYTLL 367

Query: 356 TPGGAWGGQDDG-------DADATTNPIFNTPKWNADKKGCITGTGFYFSKYVEVAAVGT 408
            PG  + G   G       + D  T+ +++            +GT +   K+     V  
Sbjct: 368 KPGTRYWGNKFGRTSWQWDETDLKTSKVYDP----------ASGTCYGNQKW-SAERVVP 416

Query: 409 VSQDSNDIHHIRYAEVLLTFAEARLEQ-GTLTQTDIDNTINKLRDRVGMKRMVIT-ELAA 466
            +Q+  D   IRYAEVLL +AEA  E+   +   D++ ++N +R RV      +T EL  
Sbjct: 417 DTQEGYDFPLIRYAEVLLNYAEAIYERDDKIENEDLNISLNLVRQRVNTNMPALTNELTQ 476

Query: 467 A-GLDLRTEIRRERRVELALEGQRYYDILRWKQGD-LLAQDVKGMKKSLVESFNQQYVAT 524
           A GLD+RTEIRRER VEL  EG R  D+ RWK  +  + Q + G+K    E   + +  T
Sbjct: 477 AHGLDMRTEIRRERTVELFNEGFRIDDLKRWKTAENEMPQTMLGIKWKGTE--YESWNTT 534

Query: 525 IATDANGYFVVNTGRKFVAPKNYLWPIPITQLQRNPVLGQNPGW 568
            + +  G  VV TGR++ A KNYL+P+P  QLQ NP LGQNPGW
Sbjct: 535 FSLNDEGCVVVETGRQW-ADKNYLYPLPSDQLQLNPTLGQNPGW 577