Pairwise Alignments

Query, 930 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 803 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  140 bits (352), Expect = 4e-37
 Identities = 85/230 (36%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 702 EVKALNDKKDEFIGLASHELKTPLASISGYLQILNRLTFDAKQQTF---LAKASNQVQRL 758
           E K +   + EFI   SHEL+TPL SI+G L ++         +     L  A    QRL
Sbjct: 565 ERKRIERLQREFISTVSHELRTPLTSITGALGLICSNVMGEVPEAMHELLDIAQQNSQRL 624

Query: 759 TALVNDLLDISKIEAGKLQLSIKSFDLEAVIRESIELIQHSAPKHSISFHSNTKPCMASG 818
            AL++DLLD+ K+ AGK++ ++    L+  +  ++   ++ A +H +       P +   
Sbjct: 625 NALIDDLLDMDKLHAGKMRFALLRQPLQPQLELALRSNRNYAEQHGVVLQLGACPAVTVE 684

Query: 819 -DAQRIEQVIINLLTNAVKYAPLADQVKVNLDCSPERITVSVRDFGPGIPHDKLKNIFTR 877
            DA R++QV+ NLL+NA K++P  +QV+++   S  R+ +SVRD GPGI  D  + +F +
Sbjct: 685 IDAMRLQQVLSNLLSNAAKFSPAGEQVELSATLSDGRVRISVRDRGPGISADFRERVFQK 744

Query: 878 FYRIDES-SPNISGLGIGLYLSHEIITRHKGDIWAESEPGLGSTFLFTLP 926
           F + D S S    G G+GL +S E+I R  G I  ESEPG G+ F F LP
Sbjct: 745 FAQADSSDSRQQGGTGLGLAISKELIERMGGQIGFESEPGHGACFWFELP 794



 Score = 40.4 bits (93), Expect = 5e-07
 Identities = 73/349 (20%), Positives = 141/349 (40%), Gaps = 43/349 (12%)

Query: 247 ILGVLAISVNVTEQVKSRLELQKAYEQIQLSKTAAQLGTFDMDLEKGIMEWDWR------ 300
           ++GV AI     EQ + R  L  AY+     +   +L      +   + ++ WR      
Sbjct: 285 LVGVTAIH---DEQEELRGYLVNAYDLAYQEQLQLRLQQIAAQVPGMLFQFHWRPDGASC 341

Query: 301 -------CRELFGV-PHQNAVTYENDFVKGLHPDDRERITSIIEALLSGSSPNGEYDVEY 352
                    +++G+ P Q A ++     +    D    + SI EA    +  + E+ VE+
Sbjct: 342 FPYVSEGVEQIYGLSPGQLAGSFAPIIARVYALDRSALLGSIREAAAELAPWHIEHRVEH 401

Query: 353 RTIGQADHRLRWVRAKGKVYYENKKAKRFIGSVLDVTSEKQNELRLADLAEKQARLAAVV 412
              G     L WV A+     +   +  + G V D+T  K  +L L    E   RL   +
Sbjct: 402 PRKG-----LIWVEARATPLQQVDGSVLWHGFVTDITVRKAEQLELERQQEMNRRL---L 453

Query: 413 NSSDDIIISKTLEGIITSWNPAAERAFGYTDAEAIG----------CHISIIIPPERIQE 462
            +  + +I+   +G +T +N  A++  G TD   +            H   + P   ++ 
Sbjct: 454 EALSEAVIACDADGCLTLFNEKAKQWHG-TDVAPVPPDEWPTRYQLYHPDGVTP---LRP 509

Query: 463 EDYIISQIRSGNNVDHFETIRQDKNGKQLHLSITVSPIIGPKGNVTGASKIARDISEQLQ 522
           E+  + +   G +V   E +   + G+  H+     P+    G   GA  +  DI+E+ +
Sbjct: 510 EEIPLLRALHGEHVCDHEMVLLGQ-GEPRHVLSNADPLYTSDGQPMGAVAVLHDITERKR 568

Query: 523 VQDTARKYTERL-EIMNMLMGSISEELEL--NKILQKVTDATTELTGAA 568
           ++   R++   +   +   + SI+  L L  + ++ +V +A  EL   A
Sbjct: 569 IERLQREFISTVSHELRTPLTSITGALGLICSNVMGEVPEAMHELLDIA 617



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 402 AEKQARLAAVVNSSDDIIISKTLEGIITSWNPAAERAFGYTDAEAIG 448
           AE+ A   A+++S+   ++    +G++TS NP AER  G+++ E +G
Sbjct: 177 AEQAALQQAMLDSASSAVLVTRPDGVVTSVNPTAERMLGHSEQELVG 223