Pairwise Alignments

Query, 930 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  161 bits (407), Expect = 3e-43
 Identities = 158/588 (26%), Positives = 271/588 (46%), Gaps = 78/588 (13%)

Query: 364 WVRAKGKVYYENKKAKRFIGSV---LDVTSEKQNELRLADLAEKQAR----LAAVVNSSD 416
           W +   +++ EN++  + +      LD    ++ E RL +  E++ R    L ++++S  
Sbjct: 410 WFQLVSRIFEENQQYTKHLAEQNKRLDKLVARRTE-RLKETTERREREYALLRSLLDSIP 468

Query: 417 DIIISKTLEGIITSWNPAAERAFGYTDAEAIGCHISIIIPPE---RIQEEDYIISQIRSG 473
           + I+ K  EG     N AAER  G+++AE IG     +  PE   RI+ ED    Q+ + 
Sbjct: 469 EAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSPEQGSRIRAED---EQVLTE 525

Query: 474 NNVDHFETIRQDKNGKQLHLSITVSPIIGPKGNVTGASKIARDISEQLQVQDTARKYTER 533
                ++  + +  GK + L     P    +G + G   + RD++ + +  +  R   ER
Sbjct: 526 RKPLRYQE-KIELAGKPVLLDTLKLPFYNRRGELMGLIAVWRDVTREYESAEQLRLSEER 584

Query: 534 LEIMNMLMGSISEELELNKILQKVTDATTELTGAAFGAFFYNKTDEQGESYMLFTLSGAP 593
               ++ M ++ + L          D+   +   A+ +    KT+E     +L T+    
Sbjct: 585 Y---HLAMDAVEDGL-----WDWYLDSEQIICNPAYYSMLGYKTNEFPA--LLSTID--- 631

Query: 594 RAAFEKFGMPRNTAVFHPTFSGEGVVRVDDITKDERYGKNAPHHGMPKGHLPVVSYLAVP 653
                        ++ HP    +  +RV +    E+Y K+      P G   +   +   
Sbjct: 632 -------------SLIHP----DDRIRVQEYR--EQYLKD------PIGAYEIEFRMRAK 666

Query: 654 V-----VSRNGNVIGGLFFGHPEPAKFTQEHETVVSSISAQAAISLDNAKLFEEVKALND 708
                 +   G V+   F    +P +    H+ +    S + A+    AK  ++ +  N 
Sbjct: 667 TGQYHWMLSRGRVVE--FTQDAQPKRMVGTHKDITRHKSNEVALL--EAK--QDAELANL 720

Query: 709 KKDEFIGLASHELKTPLASISGYLQILNRLTFDAKQQTFLAKASNQVQRLTALVNDLLDI 768
            K EF+   SHE++TP+ +I G LQ+  R +   +Q+ +L KAS   Q L  ++ND+LD 
Sbjct: 721 YKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFSAQSLLRIINDILDF 780

Query: 769 SKIEAGKLQLSIKSFDLEAVIRESIELIQHSAPKHSIS---FHSNTKPCMASGDAQRIEQ 825
           SKIEAGKL+L   +F L+ V+  S++L    A +  I    +   +   M  GD  R+ Q
Sbjct: 781 SKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQ 840

Query: 826 VIINLLTNAVKYAPLADQVKVNLDCS-----PERITVS--VRDFGPGIPHDKLKNIFTRF 878
           V+INLL+NAVK+       ++ L C        RIT+   VRD G GI  ++   +F  F
Sbjct: 841 VLINLLSNAVKF---TQNGEIELGCEDVGERDHRITLKFWVRDTGIGISREQQDKLFDAF 897

Query: 879 YRIDESSP-NISGLGIGLYLSHEIITRHKGDIWAESEPGLGSTFLFTL 925
            + D S+     G G+GL +S  +++   G +  ESEPG+GSTF FT+
Sbjct: 898 AQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTV 945



 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 6/172 (3%)

Query: 245 GAILGVLAISVNVTEQVKSRLELQKAYEQIQLSKTAAQLGTFDMDLEKGIMEWDWRCREL 304
           G ++G++A+  +VT + +S  +L+ + E+  L+  A + G +D  L+   +  +     +
Sbjct: 556 GELMGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSM 615

Query: 305 FGVPHQNAVTYENDFVKGLHPDDRERITSIIEALLSGSSPNGEYDVEYRTIGQADHRLRW 364
            G          +     +HPDDR R+    E  L    P G Y++E+R   +   +  W
Sbjct: 616 LGYKTNEFPALLSTIDSLIHPDDRIRVQEYREQYLK--DPIGAYEIEFRMRAKTG-QYHW 672

Query: 365 VRAKGKV--YYENKKAKRFIGSVLDVTSEKQNELRLADLAEKQARLAAVVNS 414
           + ++G+V  + ++ + KR +G+  D+T  K NE+ L + A++ A LA +  S
Sbjct: 673 MLSRGRVVEFTQDAQPKRMVGTHKDITRHKSNEVALLE-AKQDAELANLYKS 723



 Score = 26.9 bits (58), Expect = 0.008
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 327 DRERITSIIEALLSGS---SPNGEYDVEYRTIGQADHRLR---WVRAKG 369
           D  R+  ++  LLS +   + NGE ++    +G+ DHR+    WVR  G
Sbjct: 834 DPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKFWVRDTG 882