Pairwise Alignments

Query, 930 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 940 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  132 bits (331), Expect = 1e-34
 Identities = 106/342 (30%), Positives = 175/342 (51%), Gaps = 26/342 (7%)

Query: 242 DPFGAILGVLAISVN-VTEQVKSRLE-LQKAYEQIQLSKTAAQLGTFDMDLEKGIMEWDW 299
           D  G  +G LA   N + E+++ R E LQ++  + +     A +G   +D    I++ + 
Sbjct: 257 DAGGDEIGALAQDFNRMGEEIRLRTEALQQSEARFRRLFQEAPVGLAYVDQAGTIVDRNR 316

Query: 300 RCRELFGVPHQNAVTYENDFVKGL-HPDDRERITSIIE-ALLSGSSPNGEYDVEYRTIGQ 357
           RC ++FG   +   + E  +++    PD R ++ +  + AL + ++ +G+       I  
Sbjct: 317 RCLQMFGYSVEEMPSLEQWWLRAYPDPDYRAQVMADWQQALAAAANHDGDIAPIECNITV 376

Query: 358 ADHRLRWVRAKGKVYYENKKAKRFIGSVLDVTSEKQNELRLADLAEKQARLAAVVNSSDD 417
                R V   G    ++     F+    DVT  +Q E R+A   E      A+V SSDD
Sbjct: 377 RSGEERIVLVSGISLGDD-----FLACFYDVTESRQAE-RIARQYE------AIVRSSDD 424

Query: 418 IIISKTLEGIITSWNPAAERAFGYTDAEAIGCHISIIIPPERIQEEDYIISQIRSGNNVD 477
            I+SKTL+GI+TSWN  AE  FGY+ AE +G     + PPE + EE  I+ ++R G  V 
Sbjct: 425 AILSKTLDGIVTSWNRGAEELFGYSAAEMVGRSTLHLFPPECLAEERDILERLRRGETVK 484

Query: 478 HFETIRQDKNGKQLHLSITVSPIIGPKGNVTGASKIARDISEQLQVQDTARKYTERLEIM 537
           HF+T R  K+G+ + +S+T+SP++  +G V G SKIARDI+ +   +   +++ +RLE +
Sbjct: 485 HFDTRRIRKDGRIVDVSVTISPLLDGEGRVLGISKIARDITARKAAEAELQRHRQRLEEL 544

Query: 538 NMLMGSISEELELNKILQKVTDATTELTGAAFGAFFYNKTDE 579
                      E  + L+++ DA  E    A  AF  N + E
Sbjct: 545 VQ---------ERTRQLEELKDA-AESANVAKSAFLANMSHE 576



 Score =  110 bits (276), Expect = 3e-28
 Identities = 91/353 (25%), Positives = 152/353 (43%), Gaps = 27/353 (7%)

Query: 594 RAAFEKFGMPRNTAVFHPT---FSGEGVVRVDDITKDERYGKNAPHHGMPK----GHLPV 646
           R A E FG      V   T   F  E +    DI +  R G+   H    +    G +  
Sbjct: 440 RGAEELFGYSAAEMVGRSTLHLFPPECLAEERDILERLRRGETVKHFDTRRIRKDGRIVD 499

Query: 647 VSYLAVPVVSRNGNVIGGLFFGHPEPAKFT-----QEHETVVSSISAQAAISLDNAKLFE 701
           VS    P++   G V+G         A+       Q H   +  +  +    L+  K  +
Sbjct: 500 VSVTISPLLDGEGRVLGISKIARDITARKAAEAELQRHRQRLEELVQERTRQLEELK--D 557

Query: 702 EVKALNDKKDEFIGLASHELKTPLASISGYLQILNRLTFDAKQQTFLAKASNQVQRLTAL 761
             ++ N  K  F+   SHE++TPL +++G   ++ R     +Q   + K     Q L  +
Sbjct: 558 AAESANVAKSAFLANMSHEIRTPLNAMTGLTHLIRRAGLKPQQAEHMDKLEAAAQHLLGV 617

Query: 762 VNDLLDISKIEAGKLQLSIKSFDLEAVIRESIELIQHSAPKHSISFHSNTKPCMAS--GD 819
           +N +LD+SKIEAGK  L      +E+++      +Q       +   +  +P      GD
Sbjct: 618 INAILDLSKIEAGKFALEEAPVRVESLLGNVASFLQERVQAKGLVLRTEAQPLPPHLLGD 677

Query: 820 AQRIEQVIINLLTNAVKYAPLADQVKVNLDC-------SPERITVSVRDFGPGIPHDKLK 872
             R++Q ++N   NA+K+    +Q  + L         +   +   V+D G GIP + + 
Sbjct: 678 PTRLQQALLNYAGNALKF---TEQGSITLRVHTLEEGEADALLRFEVQDTGIGIPPEAMH 734

Query: 873 NIFTRFYRIDESSP-NISGLGIGLYLSHEIITRHKGDIWAESEPGLGSTFLFT 924
            +F+ F + D S+     G G+GL ++ ++     G+  A SEPG GSTF FT
Sbjct: 735 KLFSAFEQADNSTTRRYGGTGLGLAITRKLAQLMGGEAGASSEPGRGSTFWFT 787



 Score = 28.5 bits (62), Expect = 0.002
 Identities = 16/68 (23%), Positives = 29/68 (42%)

Query: 105 SFTPLYDQSGKVYGVMNTAADVTDLNLAKQHAEFGEQNFRNMILQAPVAMCLLRGPAFII 164
           + +PL D  G+V G+   A D+T    A+   +   Q    ++ +    +  L+  A   
Sbjct: 503 TISPLLDGEGRVLGISKIARDITARKAAEAELQRHRQRLEELVQERTRQLEELKDAAESA 562

Query: 165 EIANEAML 172
            +A  A L
Sbjct: 563 NVAKSAFL 570