Pairwise Alignments

Query, 930 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1626 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  155 bits (392), Expect = 2e-41
 Identities = 163/607 (26%), Positives = 269/607 (44%), Gaps = 97/607 (15%)

Query: 359  DHRLRWVRAK-GKVYYENKKAKRFIGSVLDVTSEKQNELRLADLAEKQARLAAVVNSSDD 417
            D +L+W     G V+ E+ + +RF+    D+T  K  ++    +A     L  V++++ +
Sbjct: 574  DQQLKWFDTVIGSVFDEHGQVERFVALQTDITERKLAQIEKNRIA---TLLTNVLDAASE 630

Query: 418  I-IISKTLEGIITSWNPAAERAFGYTDAEAIG------CHISIIIPP----------ERI 460
            + II+   +GIIT +N  AER   Y+  E IG       HI+  I            ++I
Sbjct: 631  MTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKI 690

Query: 461  QEEDYIISQIRS-GNNVDHFETIRQDKNGKQLHLSITVSPIIGPKGNVTGASKIARDISE 519
            Q  D  + + R  G+    +  +R+D  G QL +S++V+ + G  G + G   I  DIS+
Sbjct: 691  QGFDTFVHKAREEGSETRTWTYVRKD--GSQLPISLSVTAMRGNDGEILGYLGIGVDISQ 748

Query: 520  QLQVQDTARKYTERLEIMNMLMGSISEELELNKILQKVTDATTELTGAAFGAFFYNKTDE 579
             +  Q+     +  L          +E  +L      + D + +     F  +      +
Sbjct: 749  IVAQQEALLTASNHLS-------KAAEVAKLGIWTWNLLDNSLQWNDRMFAMY------D 795

Query: 580  QGESYMLFTLSGAPRAAFEKFGMPRNTAVFHPTFSGEGVVRVDDITKDERYGKNAPHHGM 639
            Q ES     LS      +E + M       HP          DD+ + E   K A  H  
Sbjct: 796  QPESLKQQGLS------YEHWRMR-----VHP----------DDVIEAEETLKRAVEHDE 834

Query: 640  P----------KGHLPVVSYLAVPVVSRNGNVIGGLFFGHPEPAKFTQEHETVVSSISAQ 689
            P           G +  V   A     R G+VI  +                +   I+AQ
Sbjct: 835  PYEPIFRILTTDGEVRYVQAAAKIERDRQGHVIRVI---------------GINIDITAQ 879

Query: 690  AAI--SLDNAKLFEEVKALNDKKDEFIGLASHELKTPLASISGYLQILNRLTFDAKQQTF 747
              +  +L NAK  +E    N  K  F+   SHE++TP+ ++ G LQ++       +QQ +
Sbjct: 880  RQLEKTLRNAK--QEADTANAAKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSVQQQGY 937

Query: 748  LAKASNQVQRLTALVNDLLDISKIEAGKLQLSIKSFDLEAVIRESIELI--QHSAPKHSI 805
            + KA    + L  L+ND+LD SKI+AGKL+L +    +E ++R+   ++   H      +
Sbjct: 938  VTKAQTAAKSLLGLLNDILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEV 997

Query: 806  SFH-SNTKPCMASGDAQRIEQVIINLLTNAVKYAPLADQVKVNLDC---SPERITV--SV 859
             F   +  P     D  R++Q++INL  NA+K+ P   QV V L+C     E +TV  S+
Sbjct: 998  MFDLDSALPAWLLADQLRLQQILINLAGNALKFTP-HGQVIVGLECLRHEAESVTVQFSI 1056

Query: 860  RDFGPGIPHDKLKNIFTRFYRIDES-SPNISGLGIGLYLSHEIITRHKGDIWAESEPGLG 918
             D G GI  ++++ IFT F + + S S    G G+GL +S  ++    G +   S+ G+G
Sbjct: 1057 VDSGIGISEEQIERIFTGFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVG 1116

Query: 919  STFLFTL 925
            S F F L
Sbjct: 1117 SRFWFDL 1123



 Score = 81.6 bits (200), Expect = 4e-19
 Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 397 RLADLAEKQARLAAVVNSSDDIIISKTLEGIITSWNPAAERAFGYTDAEAIGCHIS-III 455
           R   +  +QAR A+++  S D IIS  L G ITSWN  AER FG+T+ E +G   S +I+
Sbjct: 337 RKQQVLAEQARRASMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIV 396

Query: 456 PPERIQEEDYIISQIRSGNNVDHFETIRQDKNGKQLHLSITVSPIIGPKGNVTGASKIAR 515
           PP  + EE  + +++ +G  V +  +  Q  +G  L  S T  PI    G++ G S+  R
Sbjct: 397 PPSIVLEEQALFAEVLAGKTVLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTIR 456

Query: 516 DISEQLQVQ--------DTARKYTERLEIMNMLMGSISEELELNKILQKVTDATTELTG 566
           DI+ Q   +           R+  +R   +   +  +  +  L+ I Q++  + T+L G
Sbjct: 457 DITAQQDAERHILNLNASLERQVAKRTHALQQAL--LENQALLDTINQQLHYSVTDLDG 513



 Score = 63.2 bits (152), Expect = 1e-13
 Identities = 87/392 (22%), Positives = 170/392 (43%), Gaps = 35/392 (8%)

Query: 50  DVIGKIYAELLPELKDSGIYQKLEEVYSTGVPYHTRNSRVNLLIKGELKEF-YFNYSFTP 108
           +++GK +A L     D+  ++ + E    G  +H       +  +G+ ++  +F+     
Sbjct: 532 ELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGE-----ICNRGKDQQLKWFDTVIGS 586

Query: 109 LYDQSGKVYGVMNTAADVTDLNLAKQHAEFGEQNFRNMILQAPVAMCLLRGPAFIIEIAN 168
           ++D+ G+V   +    D+T+  LA+           N++  A     +   P  II I N
Sbjct: 587 VFDEHGQVERFVALQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFN 646

Query: 169 ---EAML-----DIWGKPRAT---VMNRPVFEALPDAKEQG--LEQVMEEVYRSGEPFSA 215
              E ML     +I GK       + +     A   + E G  ++     V+++ E  S 
Sbjct: 647 RGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHKAREEGSE 706

Query: 216 NETPVQLLRHGKQDTVYQNFVYQAYRDPFGAILGVLAISVNVTEQVKSRLELQKAYEQIQ 275
             T   + + G Q  +  +    A R   G ILG L I V++++ V  +  L  A   + 
Sbjct: 707 TRTWTYVRKDGSQLPI--SLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLS 764

Query: 276 LSKTAAQLGTFDMDLEKGIMEWDWRCRELFGVPH---QNAVTYENDFVKGLHPDDRERIT 332
            +   A+LG +  +L    ++W+ R   ++  P    Q  ++YE+  ++ +HPDD   + 
Sbjct: 765 KAAEVAKLGIWTWNLLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMR-VHPDD---VI 820

Query: 333 SIIEALLSGSSPNGEYDVEYRTIGQADHRLRWVRAKGKVYYENK-KAKRFIGSVLDVTSE 391
              E L      +  Y+  +R +   D  +R+V+A  K+  + +    R IG  +D+T++
Sbjct: 821 EAEETLKRAVEHDEPYEPIFRIL-TTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQ 879

Query: 392 KQNELRLADLAEK-----QARLAAVVNSSDDI 418
           +Q E  L +  ++      A+ A + N S +I
Sbjct: 880 RQLEKTLRNAKQEADTANAAKSAFLANMSHEI 911



 Score = 27.3 bits (59), Expect = 0.008
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 108 PLYDQSGKVYGVMNTAADVTDLNLAKQH 135
           P+YD+ G + G+  T  D+T    A++H
Sbjct: 440 PIYDEHGDIVGLSQTIRDITAQQDAERH 467