Pairwise Alignments

Query, 212 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 197 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 63.5 bits (153), Expect = 3e-15
 Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 17  WTVFIAECDTTAFKKIYLHYYHYLTYIALKKGFSTSRTKDVLNELFLSVWENRKKLGHID 76
           W +F+ E D  A+  IY HY   L    L+    +   KD + ++F+ +++ +KKL    
Sbjct: 11  WKLFL-EGDDQAYSWIYTHYIQVLYNYGLQITPDSEIVKDCIQDVFVKIYKAKKKLTVPQ 69

Query: 77  NHHNYLITVFLRKLYK--KEIPLAECLSYDEFSDLKSLPSVEEEYIIKSNQQHLSDILHK 134
           N   YL+      +Y    +  L +  ++  +   + L +V+ E+I +  +    + + +
Sbjct: 70  NPKVYLMIALKNNIYNTFNQERLQKNYAFSLYQTEEQL-TVKNEFIDQEARHEEMNNIKR 128

Query: 135 FIGQLPTKQKSLIYQKFYLGLSYEEIAAANQISINTAYNTMYKALDKLKIAIG 187
            +  L  +Q+ +IY +F   LSY++I     ++  +AYN + ++L K++ A G
Sbjct: 129 MMKILTPRQREVIYYRFIEELSYDDICQIMGLNYQSAYNLLQRSLQKIREAYG 181