Pairwise Alignments

Query, 212 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 196 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 57.8 bits (138), Expect = 1e-13
 Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 11/192 (5%)

Query: 21  IAECDTTAFKKIYLHYYHYLTYIALKKGFSTSRTKDVLNELFLSVWENRKKLGHIDNHHN 80
           I + D  AF+++Y  Y   L    +K     +   + +  LF+ ++E R+      +   
Sbjct: 9   IQQGDEEAFRQLYNEYSDLLYGYGMKIAGDDNLVTESIQSLFVYLYEKRQSCSEPQSISA 68

Query: 81  YLITVFLRKLYK--KEIPLAECLSYDEFSDLKSLPSVE---EEYIIKSN-QQHLSDILHK 134
           YL     R L    K+       S DE +  +    +E   E  I++S  ++   ++L K
Sbjct: 69  YLCVALKRMLLNELKKTANGVFTSLDEVNSSEYRFDLEIDIETAIVRSELEREQLEVLQK 128

Query: 135 FIGQLPTKQKSLIYQKFYLGLSYEEIAAANQISINTAYNTMYKALDKLKIAIGKEHLNEI 194
            I  L  +Q+ ++Y K+Y  L  +EIA    ++  T YNT + A+ +L     +E L++ 
Sbjct: 129 EINGLTKQQREVLYLKYYKKLDSDEIAEVMGLTSRTVYNTTHMAISRL-----RERLSKS 183

Query: 195 YLALMAISILFF 206
           +L  +A ++  F
Sbjct: 184 FLLTVAANLWIF 195