Pairwise Alignments

Query, 187 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 197 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 81.6 bits (200), Expect = 8e-21
 Identities = 46/168 (27%), Positives = 91/168 (54%), Gaps = 4/168 (2%)

Query: 11  WKSFCAGNEQSFIDIYEKYYSSFFVWGCKWLNGEHDFVKDQLHDFFIYIWERREKLALDI 70
           WK F  G++Q++  IY  Y    + +G + +  + + VKD + D F+ I++ ++KL +  
Sbjct: 11  WKLFLEGDDQAYSWIYTHYIQVLYNYGLQ-ITPDSEIVKDCIQDVFVKIYKAKKKLTVPQ 69

Query: 71  NVKAYLLTSFRRQL--TYQWKKHKKIEPISDFVEAIKID-DSELLDAELITEQFAKLEKA 127
           N K YL+ + +  +  T+  ++ +K    S +    ++   +E +D E   E+   +++ 
Sbjct: 70  NPKVYLMIALKNNIYNTFNQERLQKNYAFSLYQTEEQLTVKNEFIDQEARHEEMNNIKRM 129

Query: 128 LTLLSPAQREVIELRFLQNKSMQEIVDYKKTSIRTVYNLLNRGINKLR 175
           + +L+P QREVI  RF++  S  +I      + ++ YNLL R + K+R
Sbjct: 130 MKILTPRQREVIYYRFIEELSYDDICQIMGLNYQSAYNLLQRSLQKIR 177