Pairwise Alignments

Query, 187 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 73.2 bits (178), Expect = 3e-18
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 12/180 (6%)

Query: 6   TDALLWKSFCAGNEQSFIDIYEKYYSSFFVWGCKWLNGEHDFVKDQLHDFFIYIWERREK 65
           +D+LLWK F  G+  ++  IY +     F +G  + + + + VKD +HD F+ I+  R K
Sbjct: 9   SDSLLWKRFLEGDSSAYSQIYNQTVQELFRYGLLYTS-DRELVKDCIHDVFVKIYTNRAK 67

Query: 66  LALDINVKAYLLTSFRRQLTYQWKKHKKIEPISDFVEAIKIDDSE---------LLDAEL 116
           L    N+ AYL+ + +  L    KK      + +  E  K D SE          ++ E 
Sbjct: 68  LTPTDNIIAYLMVALKNTLFNALKKTSDSFSLDEADE--KEDQSEEHFSTPETIYINKEQ 125

Query: 117 ITEQFAKLEKALTLLSPAQREVIELRFLQNKSMQEIVDYKKTSIRTVYNLLNRGINKLRS 176
                 K+   ++ L+  QRE++  R++++ S+ EI      + ++V N + R + ++R+
Sbjct: 126 EKNTHMKVHAMMSSLTTRQREIVYYRYIKDMSIDEISKITDMNYQSVSNSIQRALGRVRN 185