Pairwise Alignments

Query, 187 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 193 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 50.1 bits (118), Expect = 2e-11
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 10/169 (5%)

Query: 19  EQSFIDIYEKYYSSFFVWGCKWLNGEHDFVKDQLHDFFIYIWERREKLALDINVKAYLLT 78
           ++ F  +Y  YY+    +   ++    D  ++ + DFF+Y+WER+E L       AYL +
Sbjct: 14  QKLFSKLYVSYYARLVRFASLYVGAMGD-AENIVQDFFLYLWERKEILPELQQPDAYLFS 72

Query: 79  SFRRQ----LTYQWKKHKKIEPISDFVE---AIKIDDSELLDAE--LITEQFAKLEKALT 129
           + + +    L  Q     + +P+SD +E    +K+   +LLD     I E   ++ +A+ 
Sbjct: 73  AVKHRCLNFLRSQLSIVDRRQPLSDIMEQEFKLKLYSLQLLDDSQMSIDEVEKQICRAID 132

Query: 130 LLSPAQREVIELRFLQNKSMQEIVDYKKTSIRTVYNLLNRGINKLRSEI 178
            L    RE+  +  L+    +EI +    S  TV   +   + KLR E+
Sbjct: 133 SLPERCREIFVMSKLKGMKYREIAESLGISQNTVEGQMAIALRKLREEL 181