Pairwise Alignments

Query, 187 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 196 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.0 bits (123), Expect = 7e-12
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 21/190 (11%)

Query: 5   HTDALLWKSFCAGNEQSFIDIYEKYYSSFFVWGCKWLNGEHDFVKDQ------LHDFFIY 58
           +T+ L+ +    GNE ++  IY+ +Y+      C   NG   ++KDQ      + D   +
Sbjct: 3   NTETLIVEQLKIGNENAYRYIYDHHYALL----CYVANG---YLKDQFLSETIVGDTIFH 55

Query: 59  IWERREKLALDINVKAYLLTSFR-RQLTYQWKKHKKIE-------PISDFVEAIKIDDSE 110
           +WE RE L + +++++YLL + R R + Y   + +K E       P     + I + DS 
Sbjct: 56  LWEIRETLDISVSIRSYLLRAVRNRCINYLNSEREKREIAFSALMPDEITDDKIILSDSH 115

Query: 111 LLDAELITEQFAKLEKALTLLSPAQREVIELRFLQNKSMQEIVDYKKTSIRTVYNLLNRG 170
            L   L  E   ++ KA+  L    R V      + KS +EI      SI TV   +   
Sbjct: 116 PLGILLERELENEIYKAIDKLPDECRRVFAKSRFEGKSYEEISGELGISINTVKYHIKNA 175

Query: 171 INKLRSEINE 180
           +  L + +++
Sbjct: 176 LASLHAHLSK 185