Pairwise Alignments

Query, 187 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 163 a.a., ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.2 bits (191), Expect = 7e-20
 Identities = 44/159 (27%), Positives = 91/159 (57%), Gaps = 4/159 (2%)

Query: 21  SFIDIYEKYYSSFFVWGCKWLNGEHDFVKDQLHDFFIYIWERREKLALDINVKAYLLTSF 80
           +F  +Y+ + +  F +G K L  + + +KD +HD F+ ++ ++++L    N+K+YL  S 
Sbjct: 3   AFSQLYDLHINILFNYGLK-LTIDKELLKDCIHDIFVKLYTKKDELGTIDNLKSYLFISL 61

Query: 81  RRQLTYQWKKHKKIEPIS-DFVEAIKIDDSE--LLDAELITEQFAKLEKALTLLSPAQRE 137
           + +L  + +K   +   + + V A+   D E   ++ E    +F+ +++ L  LSP QRE
Sbjct: 62  KNKLCDELRKRMYMSDTAIEDVNAVAPTDVEDDYMEEEQRKNEFSLVKRLLDQLSPRQRE 121

Query: 138 VIELRFLQNKSMQEIVDYKKTSIRTVYNLLNRGINKLRS 176
            + L +++ K  ++I +    + ++V NL++RG+ KLRS
Sbjct: 122 ALTLYYIEEKKYEDICEIMNMNYQSVRNLMHRGLTKLRS 160