Pairwise Alignments

Query, 165 a.a., RNA polymerase subunit sigma-24 from Pedobacter sp. GW460-11-11-14-LB5

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 80.5 bits (197), Expect = 1e-20
 Identities = 46/160 (28%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 3   QKDK-LFKEIFDSNSKKIFHLCYGYTGDTDAANDLLQETFLKVWQNLDKFRNKSLISTWI 61
           Q DK  F+ ++  + K+I+ L     G+   A+++LQE+F+++W  L +FR +S   TW 
Sbjct: 27  QGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQFRGESQFGTWF 86

Query: 62  YRIAVNTCLTYLRSEKRQAKDELTDNIIENKVEEFSEKNEQVALLYKCISKLEENDRLI- 120
           Y +A+N  L+ L+  +      + D  I++  E    +N+   LL + I +L E  RL+ 
Sbjct: 87  YSLALNQALSTLKQHRSFWARMVPDWQIQDAPEH--SQNDDGLLLDRLIVRLPERARLVF 144

Query: 121 ITMVLDELPYHEIADISGISEGNLRVKIHRIKQKLTELYS 160
           +   ++   + E+A + GIS G  +   HR ++ + E+ S
Sbjct: 145 VLFAVEGFSHEEVASLLGISTGTSKAHYHRARELMKEMLS 184