Pairwise Alignments

Query, 165 a.a., RNA polymerase subunit sigma-24 from Pedobacter sp. GW460-11-11-14-LB5

Subject, 164 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 84.7 bits (208), Expect = 7e-22
 Identities = 49/151 (32%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 8   FKEIFDSNSKKIFHLCYGYTGDTDAANDLLQETFLKVWQNLDKFRNKSLISTWIYRIAVN 67
           F E+ +     +  +C  Y        D  QE  +++W+   KF+ +S +STW+YR+ +N
Sbjct: 5   FIELINQYQGILQKICNIYFYQHPFREDYYQEILIRLWKAYPKFKQESTVSTWLYRVTLN 64

Query: 68  TCLTYLRSEKRQ-AKDELT--DNIIENKVEEFSEKNEQVALLYKCISKLEENDRLIITMV 124
           T +  +R E  Q    EL+  +  I +   E +   ++   LY+ I++L E ++ II + 
Sbjct: 65  TAIDLVRKESVQPVYKELSTQEYAIHDSHPEENTATDKKEQLYQAINRLSEIEKAIIILY 124

Query: 125 LDELPYHEIADISGISEGNLRVKIHRIKQKL 155
           L+   Y EIA + GISE N+ VKI+RIK++L
Sbjct: 125 LESYEYKEIAAVIGISESNVGVKINRIKKQL 155