Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1129 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  409 bits (1052), Expect = e-118
 Identities = 290/1000 (29%), Positives = 483/1000 (48%), Gaps = 78/1000 (7%)

Query: 33   LTNSSKKFQVPSPAKKNSKQIPNDSLS------NLRDSLRNKLRNSVALTLPDHDVPVLF 86
            +T+   ++ + +P K +   I     S      N R ++  +LR        D  V V +
Sbjct: 142  ITDMDGRYTITAPGKNSILVISYIGYSTEEVKINDRRNINIRLREDTKAL--DEVVVVGY 199

Query: 87   GTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAISLRG- 145
            G QK    + S ++V   ++ + PT  +   L G++ GL  +Q + + G D+    +RG 
Sbjct: 200  GQQKKESVVVSMSSVKVSDITA-PTRNLTNNLAGQVSGLIAIQRSSEPGFDDAEFWIRGI 258

Query: 146  ---------RTPLVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGMLLITTK 196
                      TPLV++DG+PR    I+P++IE+ S++KDA  TA+YG + A+G++L+TTK
Sbjct: 259  STFASNSAASTPLVLVDGIPRKITDIEPDEIETFSILKDAAATAIYGAEGANGVILVTTK 318

Query: 197  RGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLDKYKNG 256
            RG +   +ITF +++ I      P+F+ + +Y  L+NEAL NDG  A+++   ++K++N 
Sbjct: 319  RGKDEKPKITFKTEHSISSPQRLPEFVGSADYLGLYNEALRNDGEPALFSDETIEKFRNS 378

Query: 257  TNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTY 316
            T+P  +PN +W  E+LK T    R  LN+RGGS + +YFV   Y ++SG    +P+ + Y
Sbjct: 379  TDPDLYPNTDWIKELLKKTTNNHRYTLNVRGGSARAKYFVSGAYYNESGIYKGNPT-DKY 437

Query: 317  ETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNNAYPK 376
            +TN    R++ RSNID+D+T++T +S+ L G+   +N PGS+ +SI+ ++L TP   +P 
Sbjct: 438  DTNIGLDRFNLRSNIDMDVTSTTKISVDLAGQYLIANYPGSSSSSIFRSMLITPPYCFPA 497

Query: 377  FNENGSLGGNTEFQ----NNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGA 432
               +G++    + +     N Y + + SGY       + + V + Q L     GL A   
Sbjct: 498  VYSDGTVATYEQERGVNMRNPYNLLMNSGYTRQWRTGIQSKVGVQQNLKFITKGLSAKMN 557

Query: 433  ISFNSYYNENINRSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDL-------NQ 485
            IS++  ++      KS   Y+P     T +     +      S +   +DL       N+
Sbjct: 558  ISYD--FDATF---KSIRSYNPSRYHATGRDENGNLQFAQVVSGTPDLSDLKDNGIEANK 612

Query: 486  QIFSRFDLGYDKTI-DKNTFKAQLLFI-RDSYVLGGALSQVNQSLGGRFNYDYDNKYLLE 543
            +I+    + Y +T  +K+     LL++ +++      L    Q + GR +Y YD +Y +E
Sbjct: 613  KIYIDASINYKRTFAEKHDVTGMLLYMQKETQYKTEPLPYRKQGVVGRVSYAYDGRYFIE 672

Query: 544  LATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFAN-LKNTVNSLKLRTSYGLTATNAA 602
                Y G + +    ++GFFP+VG+ + +++E F+   +K   N +K+R S G T  +  
Sbjct: 673  GNFGYTGSEAFAKNHRFGFFPAVGVAYYLSNEPFYPKAIKKIANKIKIRASVGKTGNDTT 732

Query: 603  AGYFQYLQNFDNGDTFYSRNPLTTSSTKD------EGPLANPNITWEKAKKFNIGLDVSM 656
               F Y   ++     +S+   +   T        EG     +I WE   K N G D+ +
Sbjct: 733  DKRFVYRATYNMAAGSWSQGIGSNGGTNAIGNAIIEGFPETLDIGWEIETKQNYGFDLGL 792

Query: 657  LKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQYSGIELGLGYQNQINN 716
              +KV    DY+R+    +L  R T  +     V    N G     G+++ L    QI  
Sbjct: 793  FDNKVDFVFDYFRSERSHILMQRNTTPTVGGFRVNQYANYGIVNNHGVDMSLNIHQQIGK 852

Query: 717  FRYFITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEI--NNGP 774
             +       +++ +K++  DE  ++  +  +TG  + + + Y+A+  Y     I   NG 
Sbjct: 853  VKLSARGTFTYARNKIVEYDELPQRYPWMAQTGMRINENYLYIAERLYTKEDFIVSKNGS 912

Query: 775  KVDGY-------------LPVPGDLKYKDLNNDGIINTYD-MTAIGSTK-PVFFYGLTGG 819
             ++ Y             L  PGD+KYKD+N DGII++YD +  +G  K P   YG    
Sbjct: 913  GIETYTLRSELPQSTLGGLLGPGDIKYKDINGDGIIDSYDKVRGVGHPKVPEIVYGFGLN 972

Query: 820  INYKGLDFSFTLNGKANRNVYF------NFINFASTGAAGGYGQALESSLLRWTPATASQ 873
            I YKG   S    G  N +V         +  F+       Y      +L RWT    SQ
Sbjct: 973  IEYKGFYASAFFQGAGNCSVLLGGNTPEGWFPFSWGVDQSNY---RTFALDRWTEKNPSQ 1029

Query: 874  -AEYPRLSVGNN--PNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFAN 930
                PRL   N    NNS  S++W++NG +LRL+NVE+GY LP  L+  I L   R++  
Sbjct: 1030 NVLMPRLHKDNTNAANNSVASTWWLRNGGFLRLKNVELGYQLPKKLLSKINLQAARIYLM 1089

Query: 931  GLNLLTATTLDGVDPEVLIGN----VPNQRIFNFGVNLQF 966
            G N+     L   DPE    N     P  R F  G++  F
Sbjct: 1090 GYNIALWDDLKYFDPEAGNANGGNTYPKARTFTLGIDFTF 1129