Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1039 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  369 bits (947), Expect = e-106
 Identities = 282/951 (29%), Positives = 460/951 (48%), Gaps = 83/951 (8%)

Query: 79   DHDVPVLFGTQKNVKRIQSSATVSGEELKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDE 138
            D  V     +QK V  + +  T+   +LK+ P   +  M+ G++ G+  +Q + + G + 
Sbjct: 109  DEVVVTGMSSQKKVSVVGAITTIDVAQLKT-PATSLNNMIGGRMAGVITMQTSGEPGKNI 167

Query: 139  PAISLRGRTP-------LVVIDGVPRSYLSIDPEQIESISVIKDALGTALYGMKAADGML 191
                +RG +        LV+IDG+      ID + +ES S++KDA  TA+YG + A+G++
Sbjct: 168  SNFWIRGISTFGAGTGALVLIDGIEGRLEDIDTDDVESFSILKDAAATAVYGTRGANGVV 227

Query: 192  LITTKRGANMPKQITFTSQYGIQQQIERPKFLDAFNYATLFNEALANDGRQAIYTAADLD 251
            L+TTKRG +   ++T  +   I      P++L A++YA L NEA A  G   +YT  +LD
Sbjct: 228  LVTTKRGTSGKLEVTGRATMKISHIKRLPEYLGAYDYALLANEARAMSGEDDLYTRLELD 287

Query: 252  KYKNGTNPFTHPNVNWTDEILKATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDP 311
              KN  +P  +P+VNW DEI+K  +      ++ +GG +  RYF+ + Y  +      + 
Sbjct: 288  LIKNKLDPDLYPDVNWMDEIMKHNSIQQNYYVSAKGGGDVARYFLSIGYQDEGAAYRQEE 347

Query: 312  SINTYETNNSFKRYSFRSNIDVDLTNSTTLSLSLFGRIRNSNQPGS-TIASIYSTLLTTP 370
              N ++   S  + ++R+NID++LT +T L   + G + +   PG     +++S +    
Sbjct: 348  --NLFKKPLSVNKLNYRANIDMNLTKTTQLYFGVDGYVNSYVSPGGMNTDAVWSAVQQLT 405

Query: 371  NNAYPKFNENGSLG--GNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLY 428
               +P    +G+L   G      + Y M   +GY  S +      + L Q+   FL GL 
Sbjct: 406  PLLFPVTYSDGTLPVYGGQRTLASPYVMLNNTGYMQSEDNRNMLTLKLTQEFKGFLKGLT 465

Query: 429  AS--GAISFNSYYNENINRSKSFAVYSPVINPVTNQTS----YKTIGGDGTQSNSSSPTD 482
             S  G      Y++E       +    P +   T +T+     K++              
Sbjct: 466  LSVQGMTEHIGYFSE-------YRSIWPDLYRATGRTAQGVLIKSLRSSQQSLAYGDAEH 518

Query: 483  LNQQIFSRFDLGYDKTIDKNTFKAQLLFI----RDSY-----VLG-GALSQVNQSLGGRF 532
              +Q +      +++T   +TF A L +     +DS       LG  ++ + +Q+L GR 
Sbjct: 519  SYRQYYLEAKANWNRTFGDHTFGALLEYYMKDEKDSQWGAIDDLGISSIPKRHQNLSGRI 578

Query: 533  NYDYDNKYLLELATSYMGYDRYKAGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRT 592
            +YDY N+Y ++    Y G  ++K G+++GFFPS+  GW  +S ++++        LK R 
Sbjct: 579  SYDYKNRYFIDANFGYTGSAQFKKGERFGFFPSIAAGWVPSSYNWWSEKLPWFTFLKFRG 638

Query: 593  SYGLTATN--------AAAGYFQYLQNFDN--GDTF-YSRNPLTTSSTKDEGPLANPNIT 641
            SYG+   +           G F Y+   DN  G  + Y  N +T + T  +      N+ 
Sbjct: 639  SYGIVGNDQIVAVNDYTGVGRFPYMTMIDNHAGSAWGYRYNGITETYTGAD------NLK 692

Query: 642  WEKAKKFNIGLDVSMLKDKVWLTADYYRNSYYDLLQTRRTNASAVIGAVLPPENIGKNQY 701
            WE AKK N+G+D     DK+  T D +R++   + Q R T  S V     P  N+G+   
Sbjct: 693  WEVAKKANLGIDAKFFHDKLSFTVDIFRDTRDHIFQDRVTLPSFVGMVTYPKSNVGRMHS 752

Query: 702  SGIELGLGYQNQIN-NFRYFITANGSWSASKVIFNDEPFRKNAYEYR--TGQPVGQTFGY 758
             G +  + + +QIN +  + I AN ++S + + + +E   K  Y+Y   TG+P     GY
Sbjct: 753  VGSDGNIEFFHQINKDMNFTIRANYTFSQNVIDYFEE--NKLPYDYLSVTGKPFNILRGY 810

Query: 759  VADGFYNNTAEINNGPKVDGYLPV-PGDLKYKDLNNDGIINTYDMTAIGSTK--PVFFYG 815
            +++G + +  EIN  P   G+  + PGD+KY+D+N DGIIN  D   +  +   P   YG
Sbjct: 811  ISEGLFASKEEINTSPDQSGFGTIRPGDIKYRDVNGDGIINEDDKVPLSYSNQLPRMMYG 870

Query: 816  LTGGINYKGLDFSFTLNGKANRNVY-------FNFINFASTGAAGGYGQALESSLLRWTP 868
              G   +K L  S    G A  + Y       + +I F + G  G   +   +   RWTP
Sbjct: 871  FGGDFQWKDLTVSILFKGSAKVDYYRAGLGNDYGWIPFYN-GDLGNVIKLANNPKNRWTP 929

Query: 869  A-----TASQ---AEYPRLSVGNNPNNSQVSSFWVKNGNYLRLRNVEIGYSLPGHL--IK 918
            A     TA++   AE+PRLS G N NNSQ+SSFW +NG++LRL+ V + YSL  HL  IK
Sbjct: 930  AWYSGTTATENPNAEFPRLSYGKNTNNSQLSSFWRRNGSFLRLQEVSLRYSLK-HLPWIK 988

Query: 919  LIGLTNVRVFANGLNLLTATTLDGVDPEVLIGN---VPNQRIFNFGVNLQF 966
             +GL++V +     NL T   +   DPE    N    P    + F V L+F
Sbjct: 989  SVGLSSVDLEFVANNLFTIDKVKYFDPEQASANGAVYPIPATYAFQVYLRF 1039