Pairwise Alignments

Query, 966 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1117 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  418 bits (1074), Expect = e-120
 Identities = 296/975 (30%), Positives = 478/975 (49%), Gaps = 90/975 (9%)

Query: 50   SKQIPNDSLSNLRDSLRNKLRNSVALTLPDHD----VPVLFGTQKNVKRIQSSATVSGEE 105
            ++++P + L N++          + L   DH     V V  GTQK V    +  ++ G  
Sbjct: 175  TREVPVEDLGNIK----------IVLEGDDHTLNEVVVVGSGTQKKVSVTGAITSIKGAS 224

Query: 106  LKSFPTPQVGLMLYGKLPGLYVVQNNFQLGSDEPAISLRG-------RTPLVVIDGVPRS 158
            LK  P+  +     GKL G+    N+ + GS      +RG        TPL+++D V  S
Sbjct: 225  LK-LPSSTLSNSFAGKLAGVIAKTNSGEPGSGAE-FYIRGIGTFGGRATPLILLDDVEIS 282

Query: 159  YLSID---PEQIESISVIKDALGTALYGMKAADGMLLITTKRGA-NMPKQITFTSQYGIQ 214
               ++    E IES S++KDA  TA+YG + A+G++++TTK G  N    I  T++    
Sbjct: 283  SGDLNYVPAENIESFSILKDASATAIYGSRGANGVMIVTTKGGEYNSKTSINVTAENSFN 342

Query: 215  QQIERPKFLDAFNYATLFNEA--LANDGRQAIYTAADLDKYKNGTNPFTHPNVNWTDEIL 272
               + P+F+D   Y  ++N+A    N      Y+A D+++  +G NP+ +P+VNW D + 
Sbjct: 343  YLDKFPEFVDGATYMDMYNKASLARNSSATPKYSATDMERTASGVNPYLYPDVNWQDVLF 402

Query: 273  KATAPVSRQNLNLRGGSNKVRYFVDLDYLSQSGFLVTDPSINTYETNNSFKRYSFRSNID 332
            K  +   R N+N+ GG +KV+Y++ LD    SG L T  + + +  N +   Y+F++NI 
Sbjct: 403  KNMSMRQRANVNISGGGSKVKYYMSLDVSHDSGLLNTGKAYS-WNNNINIMNYTFQNNIA 461

Query: 333  VDLTNSTTLSLSLFGRIRNSNQPGSTIASIYSTLLTTPNNAYPK---------FNENGSL 383
              LT +TT+ +++  +IR    P  +   ++  +LTT    +P             N  +
Sbjct: 462  YKLTPTTTIKMNMNAQIRQKKSPNVSSEDLFKQILTTTPIEFPVTYPSQDGRIMYGNNII 521

Query: 384  GGNTEFQNNLYGMSIKSGYRPSVNRNLGADVSLMQKLDTFLPGLYASGAISF----NSYY 439
             G+T + N    M   + +  +    L   + + Q LD    GL  +  ++F    +SY+
Sbjct: 522  SGSTLYTNPYARMM--TSFAETNENTLNTVIKIDQDLDFITKGLKINAFVNFKTWSSSYF 579

Query: 440  NENIN----RSKSFAVYSPVINPVTNQTSYKTIGGDGTQSNSSSPTDLNQQIFSRFDLGY 495
            + +I     R KS +     +     +       G    S S+     +Q    +F+L Y
Sbjct: 580  DRSIAPYYYRIKSGSYDETDLENTNYELELLNSNGSDYISQSAIGKSSDQTFELQFNLNY 639

Query: 496  DKTIDKNTFKAQLLFIRDSYVLGGALSQVNQSLGGRFNYDYDNKYLLELATSYMGYDRYK 555
             +    +   A LL+ +  Y     L   NQ L GR  YDY  +YL E    Y G +R  
Sbjct: 640  ARQFGLHNVGAMLLYKQREY-RSDVLPNRNQGLSGRLTYDYGQRYLFEFNFGYNGTERLA 698

Query: 556  AGDQWGFFPSVGLGWNIASESFFANLKNTVNSLKLRTSYGLTATN----AAAGYFQYLQN 611
              D++GFFP+V LGW I++E+FF  +KN V++LK+R SYGL  ++    A   Y+ Y+  
Sbjct: 699  KEDRFGFFPAVSLGWVISNEAFFEPMKNVVDNLKIRGSYGLVGSDDLATAGGSYYLYIDK 758

Query: 612  FDNGDTFYSRNPLTTSSTKDEGPLANPNIT--------WEKAKKFNIGLDVSMLKDKVW- 662
              N D  Y +    TS    +  L  P +         WEK KK +IG+D ++ ++  W 
Sbjct: 759  ITNNDLSYLK---WTSGQNMDYQLGGPQMAYYAMSGLGWEKVKKLDIGIDFTLFRN--WT 813

Query: 663  LTADYYRNSYYDLLQTRRTNASAVIGAVLPP-ENIGKNQYSGIELGLGYQNQIN-NFRYF 720
             T DY+ +  YD+   R     ++   +  P  NIGK    G+E  + Y N  + +    
Sbjct: 814  FTFDYFYDKRYDIFMNREAWPQSLAYHIAKPWSNIGKMDNKGVEFSINYANNFSKDLSVS 873

Query: 721  ITANGSWSASKVIFNDEPFRKNAYEYRTGQPVGQTFGYVADGFYNNTAEINNGPKVD-GY 779
            + AN +++ +K+++ DEP     ++  TG+P  +  GY+A+G + +  EI+N P  + G 
Sbjct: 874  LQANFTYNKNKMVYVDEPEYPTIWKSETGKPYSRITGYIAEGLFKSQEEIDNSPAQNLGS 933

Query: 780  LPVPGDLKYKDLNNDGIINTYDMTAI---GSTKPVFFYGLTGGINYKGLDFSFTLNGKAN 836
             P  GD+KY+DLN DGII++ D T I   GST P   YG  G +NYK  DF    +G A 
Sbjct: 934  TPKVGDIKYRDLNGDGIIDSDDQTMISKYGST-PRLQYGFGGTVNYKKFDFGVFFSGSAL 992

Query: 837  RNVYFNFINFASTGAAGGYGQALESSLLR-WTPATAS-QAEYPRLSV--GNNPNNSQVSS 892
            R++  N I+    G A G    L+      W+    +  A+YPRL +   +  NN+  SS
Sbjct: 993  RSIMTNGIDPFQEGIAVGNRNVLKYIADNYWSEEKQNWDAKYPRLGLLATDVANNTVNSS 1052

Query: 893  FWVKNGNYLRLRNVEIGYSLPGHLIKLIGLTNVRVFANGLNLLTATTLDGVDPEVLIGN- 951
            +W++NG++LRL+NVE+GY +P            R+F +  NL T +  D  DPE+   N 
Sbjct: 1053 YWLRNGSFLRLKNVEVGYKIP----------YGRIFVSAANLFTFSPFDLWDPELSSWNS 1102

Query: 952  VPNQRIFNFGVNLQF 966
             P Q+  N G+ LQF
Sbjct: 1103 YPMQKTVNVGIQLQF 1117